Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0302
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   2.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   2.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   7.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   7.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   7.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 66  T*NNQAFKSQDALPPVS 116
           T + Q  KSQ +LPPVS
Sbjct: 286 TLSTQHAKSQASLPPVS 302


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 2   PYRQ*KSSGTSSIPKFHSSLQDLKQP 79
           P +  +SS  SSIPK + S   + QP
Sbjct: 355 PPKSSESSTGSSIPKLNLSTALMSQP 380


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 78  QAFKSQDALPPVS 116
           Q  +SQ +LPPVS
Sbjct: 259 QNTQSQQSLPPVS 271


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 8   RQ*KSSGTSSIPKF 49
           +Q  S+GTSSI K+
Sbjct: 783 KQGSSAGTSSITKY 796


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 188 QPWHGV 171
           +PWHGV
Sbjct: 84  EPWHGV 89


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -3

Query: 188 QPWHGV 171
           +PWHGV
Sbjct: 84  EPWHGV 89


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 8   RQ*KSSGTSSIPKF 49
           +Q  S+GTSSI K+
Sbjct: 873 KQGSSAGTSSITKY 886


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,348
Number of Sequences: 438
Number of extensions: 1133
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)