Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0302
         (250 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    28   0.99 
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof...    27   2.3  
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    26   3.0  
At5g40380.1 68418.m04898 protein kinase family protein contains ...    25   5.3  
At5g39390.1 68418.m04772 leucine-rich repeat family protein / pr...    25   5.3  
At3g15250.1 68416.m01926 expressed protein ; expression supporte...    25   5.3  
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s...    25   7.0  
At3g07670.1 68416.m00919 SET domain-containing protein similar t...    25   9.2  
At2g31240.1 68415.m03815 tetratricopeptide repeat (TPR)-containi...    25   9.2  

>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 35  SIPKFHSSLQDLKQPSLQEPRCLATRV 115
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 493

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 17  KSSGTSSIPKFHSSLQDLKQPSLQEPRCLATRVTGHARL 133
           K S  S I  FH   Q+ ++P ++ PR L  + +  A+L
Sbjct: 445 KHSSMSDIEFFHKVEQEKEKPMMKSPRALPKKFSYLAKL 483


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 208 SNGSDSSSRGTEYSTTCRTARSAYSKARMACDTGGKASWLLKA 80
           ++GSDSS R    ++T  T    Y KA    D     S +LK+
Sbjct: 292 ASGSDSSPRKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKS 334


>At5g40380.1 68418.m04898 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 591

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 59  DWSEISVLNWSQKISIV 9
           D S+  VLNWSQ+++I+
Sbjct: 342 DESQSKVLNWSQRLNII 358


>At5g39390.1 68418.m04772 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 502

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 139 YSKARMACDTGGKASWLLKAWLF*VLKTGVK 47
           Y+K+ ++C T      ++  WL  VL+ G+K
Sbjct: 441 YTKSVLSCSTSRGGRTMVDEWLRLVLEVGIK 471


>At3g15250.1 68416.m01926 expressed protein ; expression supported
           by MPSS
          Length = 217

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 241 VSRFTDHLTAASNGSDSSSR-GTEYSTTCRTARSAYS 134
           +S  T   T+  N ++SSS  G+  S+T ++ R++YS
Sbjct: 64  ISSTTSEYTSRCNSTNSSSSFGSNNSSTSQSPRTSYS 100


>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
           strong similarity to dynamin-like protein 6 (ADL6)
           [Arabidopsis thaliana] GI:6651399; contains Pfam
           profiles PF01031: Dynamin central region, PF00350:
           Dynamin family, PF02212: Dynamin GTPase effector domain,
           PF00169: PH domain; identical to cDNA dynamin-like
           protein ADL3,  GI:4803835
          Length = 920

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -1

Query: 208 SNGSDSSSRGTEYSTTCRTARSAYSKARMA 119
           SNG DS   G  +  TCR       KA  A
Sbjct: 651 SNGPDSKGPGLVFKITCRVPYKTVLKAHNA 680


>At3g07670.1 68416.m00919 SET domain-containing protein similar to
           ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit N-methyltransferase I [Spinacia oleracea]
           GI:3403236; contains Pfam profile PF00856: SET domain
          Length = 504

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 47  FHSSLQDLKQPSLQEPRCLATRVTG 121
           +   L  LK+  L  P+C   R+TG
Sbjct: 343 YEEKLDALKKHGLSTPQCFPVRITG 367


>At2g31240.1 68415.m03815 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 617

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -1

Query: 223 HLTAASNGSDSS---SRGTEYSTTCR 155
           HL AAS+ S SS   S   E ST+CR
Sbjct: 25  HLNAASSSSSSSSLISPAREISTSCR 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,967,471
Number of Sequences: 28952
Number of extensions: 67629
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)