Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0300
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    59   2e-09
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779...    30   1.0  
01_01_0043 - 321810-321973,322054-322846                               29   3.2  
01_01_0044 - 326337-326500,326618-327398                               28   4.2  
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849...    27   7.4  
07_03_0773 - 21387606-21387878,21387965-21388121,21388202-213884...    27   9.8  
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100...    27   9.8  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/83 (36%), Positives = 50/83 (60%)
 Frame = +1

Query: 298 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 477
           +G+Q+++P+RG     + LK+ GDLGQ++   Y+  D +SI   +  SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 478 N*EFQIQ*CSLDGVRRIARICRE 546
              +     +     ++A I +E
Sbjct: 61  TRNYGFDEVNHHMAEQLAMISKE 83


>03_05_0714 -
           27076881-27077218,27077332-27077482,27077768-27077903,
           27078309-27078457,27079141-27079267,27080033-27080172,
           27080264-27080329,27080760-27080901,27081021-27081115,
           27081640-27082140
          Length = 614

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 182 NLAAYKRGTGGRSSFNGIVATVFGSPDLSDAMCATNWEKLVPS*FYHTEAIS 337
           NLA +K      +S NG++ATV     L D  C T   +L+ + F    ++S
Sbjct: 277 NLACHKSLANAITSHNGLIATVVDQLFLDDPGCLTETFRLLSTIFQSNASMS 328


>01_01_0043 - 321810-321973,322054-322846
          Length = 318

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +1

Query: 256 TGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDLGQVLFTPYHLLDEESIA 423
           TG++GR+V     ++G   T L+      D   AQ L    D G  L     L D  S+ 
Sbjct: 20  TGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDAGVTLLHG-DLHDHASLL 78

Query: 424 KAVRYSNVVINLV 462
           +AVR ++VVI+ V
Sbjct: 79  RAVRDADVVISAV 91


>01_01_0044 - 326337-326500,326618-327398
          Length = 314

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +1

Query: 256 TGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDLGQVLFTPYHLLDEESIA 423
           TG++GR+V     ++G   T L+      D   +Q L+   D G  L     L D  S+ 
Sbjct: 18  TGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDAGVTLLHG-DLYDHASLL 76

Query: 424 KAVRYSNVVINLVG 465
            AVR ++VVI+ +G
Sbjct: 77  SAVRDADVVISTLG 90


>12_02_0752 +
           22784052-22784288,22784531-22784704,22784799-22784930,
           22785062-22785439
          Length = 306

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 56  YLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNL 187
           YLSHK++ I L T    KL+ +  S+S V       + DR P+L
Sbjct: 121 YLSHKISTIELGTMVFQKLVPV--SLSNVMCTVKILALDRAPDL 162


>07_03_0773 -
           21387606-21387878,21387965-21388121,21388202-21388439,
           21388522-21388729,21390046-21390201,21390414-21391211
          Length = 609

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 161 YSSDRKPNLAAYKRGTGGRSSFNGIVATVFGSPDLSDAMCATNWEKLV 304
           Y+ +    L A  +  G  + F+ I +    SPDLS A C +  + LV
Sbjct: 171 YAVENSTKLFATGQRVGNDTGFSNIYSMAQCSPDLSPAQCRSCLDGLV 218


>03_01_0130 -
           1007433-1007712,1007739-1007803,1007804-1008001,
           1008103-1008273,1008405-1008553,1008780-1008927,
           1009015-1009083,1009168-1009416,1009516-1009710,
           1009869-1009985,1010205-1011329
          Length = 921

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 434 RTAFAIDSSSRRW*GVNRTWPKSPHTFNLWAS 339
           +TA  +D+ S  W G++  W   PH   +W S
Sbjct: 60  KTARTVDAKSSNWSGMDVVW---PHGHGVWGS 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,979
Number of Sequences: 37544
Number of extensions: 274284
Number of successful extensions: 500
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)