Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0300
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)             121   4e-28

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score =  121 bits (291), Expect = 4e-28
 Identities = 54/100 (54%), Positives = 74/100 (74%)
 Frame = +1

Query: 247 FRFTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAK 426
           F  TGF+GRYV N+LG++GTQL +PYRGD +D + L++ GDLGQ+ F  +HL DEESIAK
Sbjct: 26  FGATGFLGRYVINRLGRVGTQLTVPYRGDEHDIRHLRLMGDLGQIDFFDFHLKDEESIAK 85

Query: 427 AVRYSNVVINLVGRDYEN*EFQIQ*CSLDGVRRIARICRE 546
            V++SNVV+NL+GR +E   F  +   +DG R IA+  +E
Sbjct: 86  MVKHSNVVVNLIGRGFETRNFNFEEVHVDGARTIAKAAKE 125



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +2

Query: 197 KRGTGGRSSFNGIVATVFGS 256
           K+GTGGRSSFNG+ ATVFG+
Sbjct: 9   KKGTGGRSSFNGVSATVFGA 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,533,333
Number of Sequences: 59808
Number of extensions: 332620
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)