Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0300
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   103   1e-22
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   3.8  

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  103 bits (246), Expect = 1e-22
 Identities = 51/100 (51%), Positives = 68/100 (68%)
 Frame = +1

Query: 247 FRFTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAK 426
           F  +GF+G  V NK  K G+Q+I+PYR D Y  +  KV G+LGQVL+ P+ L+DEESI K
Sbjct: 65  FGASGFLGLPVVNKFAKNGSQIIIPYRQDPYYMREHKVLGELGQVLYFPFELMDEESIRK 124

Query: 427 AVRYSNVVINLVGRDYEN*EFQIQ*CSLDGVRRIARICRE 546
           AV+YSNVVINL+G      ++     +  G RR+ARIC+E
Sbjct: 125 AVKYSNVVINLIGTRVPTGKYNYYDVNDTGARRLARICKE 164



 Score = 35.9 bits (79), Expect = 0.019
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +2

Query: 95  QATSKLLHLNGSMSVVYIKAANYSSDRKPNLAAYKRGTGGRSSFNGIVATVFGS 256
           QA S +   N S +V   + A+         A +++G GGR+SF+G V TVFG+
Sbjct: 14  QAVSVVGSQNFSSAVTSAENAHPEPRVSSQSAQFRKGAGGRASFSGNVVTVFGA 67


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 249 SVHRICRTLCVQQIGKNWYPVNFTIQRRFL*CPKVESVRRFRPGPV 386
           S   +C    +  I +  Y VN T+Q   + CP VES    +P PV
Sbjct: 656 STKSLCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPV 701


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 199 LICCKVGFTIRTVVSGFDVHNTHRPIQMK 113
           L C KV  ++RT V   + H+TH  +Q++
Sbjct: 29  LTCRKVCRSLRTAVDKIETHSTHLTVQLR 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,314,917
Number of Sequences: 27780
Number of extensions: 249232
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)