Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0296
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   4.2  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   9.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.6  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 226 WVQRMALSCSRLHGNTSCLFVLSL 155
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 216 GWRSPALAFTETLPV 172
           GW+SP+LA   TLP+
Sbjct: 30  GWKSPSLAEPFTLPI 44


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -2

Query: 478  IMGTARIDVVFNHSNASESDQT----KVQNVETNXIKSLGNIGPLKTSATELLAVLNSSG 311
            I G+  + +++  ++    D      K+Q +E    K   ++ PL+T   EL A + +  
Sbjct: 1263 ISGSQEVQLLYESNSVLRKDNDAKLGKIQELEKEVEKLNASLNPLQTEINELKAEIGAKT 1322

Query: 310  A 308
            A
Sbjct: 1323 A 1323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,212
Number of Sequences: 5004
Number of extensions: 46060
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)