Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0296
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 28 5.6
07_01_0975 + 8223269-8224354 28 5.6
07_01_0446 - 3371829-3372132,3374691-3375673 28 5.6
07_01_0445 - 3365244-3366227 28 5.6
06_01_0866 + 6582131-6583294 27 7.4
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 27 7.4
04_01_0357 + 4667796-4667901,4668722-4668816 27 7.4
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 27 7.4
10_07_0062 - 12499872-12501350 27 9.8
09_04_0649 + 19212097-19212176,19212448-19212579,19212789-192131... 27 9.8
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 27 9.8
06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539... 27 9.8
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 27 9.8
03_06_0249 + 32638112-32639140 27 9.8
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 27 9.8
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 308 SEFKVTDDG*VCGTVREVVLVTAAT-GSMGPADGALLLSPSRKHFLFICVEPGSTPR 141
SE +VT DG +V ++ + A G+ G G L PSR + + P PR
Sbjct: 35 SEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 245 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 84
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 65 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 169
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 41 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 136
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>06_01_0866 + 6582131-6583294
Length = 387
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 270 NSARGGSSHRRYRQHGSSG 214
N A+G S HR+++ HG G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -2
Query: 304 NLR*LMMGRYVEQCARWF*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSLAV-LRAVQAE 128
++R ++ +V+ WF PPL +R L C +L SL + L
Sbjct: 1576 DIRYCLIMLFVQGYKDWFFLPPLINQRPRRTKLQCRKLSQTRKSFASCSLPLHLDCTGCF 1635
Query: 127 LHQCHHRRDLQLHSH 83
+ Q HHR Q H
Sbjct: 1636 IRQAHHRLRKQPFDH 1650
>04_01_0357 + 4667796-4667901,4668722-4668816
Length = 66
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 225 HAAGSGGD*NHLAH 266
HAAGSGGD H+ H
Sbjct: 29 HAAGSGGDLGHMGH 42
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 155 GSTPRCPSGTPSMSPQKGSPASQP 84
GS+PRC S M Q+ SP S P
Sbjct: 307 GSSPRCASPEKIMGSQERSPRSSP 330
>10_07_0062 - 12499872-12501350
Length = 492
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -2
Query: 259 RWF*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSLAVLRAVQAELHQCHHRRDLQL 92
+W P +P WV + + + + C + L VL+ + C HR +L +
Sbjct: 364 QWMRHPAIPG-WVSLLEMDSTLVFSAVECTTRIDLWVLQDYERSTWACKHRIELPM 418
>09_04_0649 +
19212097-19212176,19212448-19212579,19212789-19213196,
19213853-19213943,19214198-19214251
Length = 254
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -2
Query: 496 LKGSNYIMGTARIDVVFNHSNASESDQTKVQNVETNXIKSLGNIGPLKTSATELL 332
LK YI+G + S+ VET+ I+SL +G T+LL
Sbjct: 116 LKLLGYIIGRYGVPWTVKRSHTYSVTDASTSVVETDQIQSLNRVGGASNDITKLL 170
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 158 PGSTPRCPSGTPSMSPQKGSPASQP 84
P STP GTPS +P G+P+S P
Sbjct: 23 PSSTPAF--GTPSTNPAFGTPSSTP 45
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 158 PGSTPRCPSGTPSMSPQKGSPASQP 84
P STP GTPS +P G+P+S P
Sbjct: 50 PSSTPSF--GTPSTAPAFGTPSSTP 72
>06_03_0487 -
21352955-21353080,21353164-21353357,21353815-21353973,
21354117-21354242,21354502-21354704,21354892-21355019,
21355323-21355565,21356734-21356928
Length = 457
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 269 TVREVVLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 93
T +V + A+ GS G G L +CVEP +P G+P +G+ A
Sbjct: 306 TAGKVDVFVASVGSGGTLTGVGRYLKMKNPSINIVCVEPSESPVISGGSPGPHKIQGTGA 365
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = -1
Query: 269 TVREVVLVTAATGSMGPADGA-LLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKG-SP 96
T +V + A +G+ G G L ICVEP +P G PS +G P
Sbjct: 188 TAGKVDIFVAGSGTGGTISGVGKYLKMKNPAVKVICVEPAESPVISGGKPSRHKIQGMGP 247
Query: 95 ASQPYTLN 72
P L+
Sbjct: 248 GFVPKNLD 255
>03_06_0249 + 32638112-32639140
Length = 342
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 65 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQH 166
NF++ C+ + E+P+VV ++RL A H
Sbjct: 97 NFHACCLRLAHELPAVVLSADYRLAPEHRLPAAH 130
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 257 VVLVTAATGSMGPADGALLLSPSRKHFL 174
V V A + S+GP D + L P KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,100,866
Number of Sequences: 37544
Number of extensions: 338995
Number of successful extensions: 1047
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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