Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0296
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.61 
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   1.9  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   3.3  
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)                   27   7.6  
SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)                  27   7.6  

>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 468 LPALMSFSTTRTHPKAIKQKFRMWKQIXLNHSE 370
           LP  M   T +T PK + Q FR +KQ+   H +
Sbjct: 40  LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72


>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -1

Query: 203 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 96
           L++P  K+F++ CV PG++ R P+  PS++    +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -1

Query: 263 REVVLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 129
           R   LV A T ++ PAD +L+ SPSR      CV    T  C +G
Sbjct: 747 RARTLVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 164 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 78
           + P S P  PS +P+ +   GSP  QP++
Sbjct: 77  LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 155 GSTPRCPSGTPSMSPQKGSPASQPYTLNRN*TVAA--VSSRRNSPHTQ 18
           G T   P G   +  ++GSP++QP  + +  T     V + R SP TQ
Sbjct: 69  GVTKYTPRGVHQVHIERGSPSTQPEGVTKYTTRGGHQVHNERGSPSTQ 116


>SB_31861| Best HMM Match : rve (HMM E-Value=3.6e-07)
          Length = 1253

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 146 PRCPSGTPSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHTQKRV 9
           P    G    SP +GSP    + L R     +  +RR+ PH Q  V
Sbjct: 359 PHLLQGRMEASPLQGSPQVTNHNLARTKGQTSEGNRRHHPHIQAAV 404


>SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)
          Length = 1171

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -2

Query: 508 VALVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVETNXIKSLGNIGPLKT-SATELL 332
           ++L+  G+N I+GT R + +  H  +   ++ K + ++ N  K +  +  LKT S  +LL
Sbjct: 28  LSLIEYGNNEILGTVRTEFMNPHLISVRLNERKQRGIDEN--KKMAYLVDLKTISVVDLL 85

Query: 331 AVL 323
           + L
Sbjct: 86  SGL 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,321
Number of Sequences: 59808
Number of extensions: 387681
Number of successful extensions: 1070
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)