Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0296
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    33   0.10 
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    33   0.10 
Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41535-14|AAB63404.1|  169|Caenorhabditis elegans Hypothetical p...    27   6.7  
U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protei...    27   6.7  
AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 224 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 93
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 57


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 224 GPADGALLLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPA 93
           GPA GA   +PSR     +  +P +T R P+ TP+  P + +P+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPS 186


>Z81567-5|CAB04588.2|  154|Caenorhabditis elegans Hypothetical
           protein K08C9.7 protein.
          Length = 154

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 197 SPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPASQPYTLNR 69
           SPS K+F     E G   R P+G P++S Q+ +  +QP TL +
Sbjct: 107 SPSPKYFKID--ENGKISRLPTGIPTVSIQREAFMTQPTTLRK 147


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 2   CGAHVFACVVNFFG-CSRLPP 61
           C  H+F C + FFG CSR  P
Sbjct: 555 CDRHIFRCSIPFFGFCSRCEP 575


>U41535-14|AAB63404.1|  169|Caenorhabditis elegans Hypothetical
           protein F18A1.8 protein.
          Length = 169

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 233 GSMGPADGALLLS---PSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPAS 90
           G+  P    L LS   P+ + FL   ++  S     SG+P ++PQK +P S
Sbjct: 101 GTGSPLSAGLSLSNPLPAGRGFLSPAIQNTSNQFTFSGSPRITPQKHTPVS 151


>U39644-7|AAO44908.1|  307|Caenorhabditis elegans Collagen protein
           171 protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -1

Query: 239 ATGSMGPADGALLLSPSRKHFLFICVE--PGST----PRCPSGTPSMSPQKGSPASQPY 81
           A G+ GP DG      S   F F C    PG      P+ P+G P    Q G+P +  +
Sbjct: 140 APGTNGP-DGRPATQASASDFCFDCPPGPPGPAGSIGPKGPNGNPGFDGQPGAPGNNGF 197


>AL023821-2|CAA19437.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5B.3 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 478 IMGTARIDVVFNHSNASESDQTKVQNVETNXIKSLGNIGPL-KTSATELLAVLNSSGAPN 302
           I+GTA    V ++  A E+D      + T+ + S      + +T +T  L  ++S+ AP+
Sbjct: 33  IIGTAHFTYVLSNHAACETDIITKTTIRTSTVTSFTKTSTISETPSTTSLVSISSTHAPS 92


>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
           protein F55A3.3 protein.
          Length = 1030

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 535 LFPHYTRQSVALVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVET 392
           LF H    +V L+LK   YI+G+ R    F           KV  V T
Sbjct: 58  LFGHEIADTVLLLLKDHIYILGSNRKVEFFGSVTGDNQSSGKVPTVST 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,860
Number of Sequences: 27780
Number of extensions: 283935
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)