Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0296
         (545 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    31   0.50 
At2g09910.1 68415.m01029 hypothetical protein                          29   1.5  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    29   2.0  
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing pro...    29   2.7  
At4g20730.1 68417.m03013 filament protein-related similar to Cyt...    29   2.7  
At4g28840.1 68417.m04122 expressed protein                             27   8.2  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -2

Query: 544 TVTLFPHYTRQSVALVLKGSNYIMGTARIDVVFNHSNASESDQTKVQNVETNXIKSLGNI 365
           T  LFP  ++   A++L+  N ++   +    + H N  E +Q    ++E +  K L N+
Sbjct: 232 TGNLFPTRSKYDEAMMLERRNMLLKMLKFGGNWKHINLEEDEQLCYNHIEIDIKKLLENL 291

Query: 364 G 362
           G
Sbjct: 292 G 292


>At2g09910.1 68415.m01029 hypothetical protein
          Length = 985

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 289 MMGRYVEQCARWF*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 155
           M   Y  QC  WF  P L  +++ R  ++ S+L     C FV++L
Sbjct: 166 MYEAYFRQCHLWFPIPSLIISFLNRRRMAFSQLTPVAICNFVVAL 210


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
           NUF1 protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; similar to
           Myosin heavy chain, smooth muscle isoform (SMMHC)
           (SP:P35749) {Homo sapiens}
          Length = 1004

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 289 MMGRYVEQCARWF*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 155
           M   Y  QC  WF  P L  +++ R  ++ S+L     C FV +L
Sbjct: 165 MYEAYFRQCHLWFPIPSLIISFLNRRRMAFSQLTPAAICNFVAAL 209


>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing
           protein similar to meiotic asynaptic mutant 1
           [Arabidopsis thaliana] GI:7939627, aysnaptic 1 [Brassica
           oleracea var. alboglabra] GI:23506946; contains Pfam
           profile PF02301: HORMA domain
          Length = 1399

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 289 MMGRYVEQCARWF*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 155
           M   Y  QC  WF  P L  +++ R  ++ S+L     C FV +L
Sbjct: 757 MYEAYFRQCHLWFPIPSLIISFLNRRHMAFSQLTPAAICNFVAAL 801


>At4g20730.1 68417.m03013 filament protein-related similar to
           Cytadherence high molecular weight protein 2 (SP:P47460)
              [Mycoplasma genitalium]; similar to YEAST NUF1
           protein (Spindle poly body spacer protein SPC110)
           (SP:P32380) {Saccharomyces cerevisiae}; also
           SP|Q9UKX2|MYH2_HUMAN Myosin heavy chain, skeletal
           muscle, SP|P31732|OV71_ONCVO Muscle cell intermediate
           filament protein SP|P12882|MYH1_HUMAN Myosin heavy
           chain, skeletal muscle,. SP|Q17107|AV71_ACAVI Muscle
           cell intermediate filament protein
          Length = 800

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 289 MMGRYVEQCARWF*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 155
           M   Y  QC  WF  P L  +++ R  ++ S+L     C FV +L
Sbjct: 166 MYEAYFRQCHLWFPIPSLIISFLNRRHMAFSQLTPAAICNFVAAL 210


>At4g28840.1 68417.m04122 expressed protein
          Length = 146

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 155 GSTPRCPSGTPSMSPQKGSPASQPYTLNRN 66
           G  P  PS +PS S    SP   PY  + N
Sbjct: 84  GGYPSIPSSSPSFSYASSSPPPAPYGFHPN 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,300
Number of Sequences: 28952
Number of extensions: 251832
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)