Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0295
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    58   7e-10
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    54   2e-08
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    31   0.15 
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    26   3.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.4  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   7.4  
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    25   9.8  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 58.4 bits (135), Expect = 7e-10
 Identities = 34/90 (37%), Positives = 48/90 (53%)
 Frame = +2

Query: 239 SNKNNITSPEIYQPVGPYSQAILADKTLYISGILGLDRDAQXVCGGAEAQTRXALDNLRH 418
           S K  I SP++    GPY+QAI A+  +Y SG + +  + + + G    QTR  L NL+ 
Sbjct: 37  STKTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQE 94

Query: 419 VLEAXGASXESVVKTXVLXASXDDFXTFNK 508
           VL   G+S   +VK  +  A  DDF   NK
Sbjct: 95  VLTEAGSSLNKIVKVNIFLADMDDFAAVNK 124


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 26/75 (34%), Positives = 40/75 (53%)
 Frame = +2

Query: 284 GPYSQAILADKTLYISGILGLDRDAQXVCGGAEAQTRXALDNLRHVLEAXGASXESVVKT 463
           GPY+QA+ +   ++ SG   + +D   V G  + QTR  ++NL  VL   G+S E +VK 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 464 XVLXASXDDFXTFNK 508
            +     DDF   N+
Sbjct: 74  NIFLTDIDDFAAMNE 88


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGL 346
           +GPYSQ+I A+  ++ISG +GL
Sbjct: 421 IGPYSQSICANGVVFISGQIGL 442


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 149 SLDVNRSIVXMTXRLHYRCSDSKSMEYLHKCYLIIIIP 36
           SLDV ++++  T     RC++  +  Y  K ++I  IP
Sbjct: 56  SLDVQKNMITQTSLYVLRCNNISTFPYATKIHVINPIP 93


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 537  ASFRKIFCIDLLKVXKSSMLAN 472
            ASFRK + ++LLK+ +S ++ +
Sbjct: 2034 ASFRKYYILELLKISESFLIVD 2055


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 332  QKCIRSCPLKLLDCTDLLVDIFPEML-YCFCYFIVIRIF 219
            +K +RSC  K+L  T L  D+F  +  Y F     +R F
Sbjct: 1223 EKLVRSCLSKILGNTVLSADVFENLQNYGFDSLCAMRFF 1261



 Score = 24.6 bits (51), Expect = 9.8
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = +2

Query: 77   YSYYLNTDSVIFXSXELLTYLHLKNKNELRRFCTGVRRQSFAQNEFSKKFE*Q*SNKNNI 256
            Y  Y N  ++   S  +L Y HL + ++   F   V   S      + +FE Q    N +
Sbjct: 4180 YKTYGNVAAIPMES--ILVYQHLPDSSQSETFLNVVTDNSAVDYPIAIQFEIQGDTLNWL 4237

Query: 257  TSPEIYQPVGPYSQAIL 307
            TS ++ +  G  +  +L
Sbjct: 4238 TSLDLARVDGDVANQLL 4254


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 280 SRSVQSSNF--SGQDLIHFWNSRIGSRC 357
           S+ +Q   F  SGQD++ FW +R+   C
Sbjct: 504 SKDIQPLPFIESGQDILFFWIARMALLC 531


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 384 ASAPPQTICASRSNPRIPEMYKVLSAKIA 298
           A+ P   +CA   NP+  E+Y +   K+A
Sbjct: 26  ANIPADIVCAIDINPQANEIYNLNHGKLA 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,919
Number of Sequences: 5004
Number of extensions: 34355
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)