Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0295
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102...    50   1e-06
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    46   2e-05
07_01_0548 - 4061829-4062956                                           29   3.3  

>07_03_0593 +
           19808148-19808310,19809416-19809531,19810129-19810202,
           19810286-19810335,19810498-19810592
          Length = 165

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 29/82 (35%), Positives = 44/82 (53%)
 Frame = +2

Query: 281 VGPYSQAILADKTLYISGILGLDRDAQXVCGGAEAQTRXALDNLRHVLEAXGASXESVVK 460
           +GPYSQAI A+  +++SG+LGL+ +               + N+  +L+A GAS  SVVK
Sbjct: 69  LGPYSQAIKANNMVFVSGVLGLNPE--------------VMKNMGEILKASGASYSSVVK 114

Query: 461 TXVLXASXDDFXTFNKSMQNIF 526
           T ++ A   DF   N+     F
Sbjct: 115 TTIMLADLQDFKKVNEIYAKYF 136


>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 281  VGPYSQAILADKTLYISGILGLDRDAQXVC-GGAEAQTRXALDNLRHVLEAXGAS 442
            +GPYSQA L  + LY++G LGLD     +C GG  A+   AL N   V  A G S
Sbjct: 870  IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCS 924


>07_01_0548 - 4061829-4062956
          Length = 375

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 408 LSRA*RVCASAPPQTICASRSNPRIPEMYKVLSA 307
           LS A ++C++ PP     + +NPR+   Y  L A
Sbjct: 21  LSAAAQLCSACPPAASQTAENNPRLQRAYVALQA 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,856,971
Number of Sequences: 37544
Number of extensions: 201234
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)