Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0294
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    35   0.006
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   6.3  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   8.4  

>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 264 CSRASANYAIFQ--RHPKYKKXLCRTXHSVGFXPYGXR 371
           C  A  N  + +  RHPKYK   CR+    G+ PYG R
Sbjct: 347 CQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLR 384



 Score = 29.5 bits (63), Expect = 0.29
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           YKT  C+ +  +G C+ G KC    G +EL+
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELK 357


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 245 FYXPXFLK-TVGRXRSCSDLWLLAE 174
           FY P   K ++GR  +C ++WL  E
Sbjct: 184 FYDPDMSKFSLGRISACREIWLALE 208


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLL 268
           Y+  +C+ +  TG C  GD C  L
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,927
Number of Sequences: 5004
Number of extensions: 21935
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)