Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0294
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0220 + 28482589-28483752 38 0.004
01_06_0049 - 25953811-25954131,25954223-25954903 38 0.004
02_01_0703 + 5251901-5251950,5252783-5253554 35 0.032
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 34 0.055
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 33 0.096
08_01_0395 - 3502750-3503033,3504844-3505663 33 0.17
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 29 2.1
03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669 29 2.1
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382... 28 3.6
02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141 28 4.8
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140... 27 6.3
>05_07_0220 + 28482589-28483752
Length = 387
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
+KT LC + ETG C GD+C GV ELR
Sbjct: 313 FKTELCNKWEETGACPYGDQCQFAHGVAELR 343
Score = 33.9 bits (74), Expect = 0.073
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 300 RHPKYKKXLCRTXHSVGFXPYGXRFH 377
RHP+YK +CR + G PYG R H
Sbjct: 347 RHPRYKTQVCRMVLAGGVCPYGHRCH 372
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 194 RYKTXLCRPF*ETGXCKNGDKCH 262
RYKT +CR G C G +CH
Sbjct: 350 RYKTQVCRMVLAGGVCPYGHRCH 372
>01_06_0049 - 25953811-25954131,25954223-25954903
Length = 333
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
+KT LC + ETG C GD+C GV ELR
Sbjct: 259 FKTELCNKWEETGDCPYGDQCQFAHGVTELR 289
Score = 31.1 bits (67), Expect = 0.51
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 300 RHPKYKKXLCRTXHSVGFXPYGXRFH 377
RHP+YK +CR + PYG R H
Sbjct: 293 RHPRYKTAVCRMVLAGDVCPYGHRCH 318
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 35.1 bits (77), Expect = 0.032
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLSAS 304
+ +KT LC F G C GD+CH G ELR +A+
Sbjct: 237 SNFKTKLCENF-TKGSCTFGDRCHFAHGENELRKSAAA 273
Score = 34.3 bits (75), Expect = 0.055
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +2
Query: 200 KTXLCRPF*ETGXCKNGDKCHLLTGVREL 286
KT LC + CK GDKCH G REL
Sbjct: 74 KTRLCNKYNTAEGCKWGDKCHFAHGEREL 102
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 34.3 bits (75), Expect = 0.055
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLSASS 307
+ +KT LC F G C GD+CH G ELR A++
Sbjct: 572 SNFKTKLCENF-NKGSCTFGDRCHFAHGESELRKPPAAA 609
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 200 KTXLCRPF*ETGXCKNGDKCHLLTGVREL 286
KT +C + CK G KCH G REL
Sbjct: 414 KTRMCNKYNTAEGCKWGSKCHFAHGEREL 442
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 33.5 bits (73), Expect = 0.096
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 200 KTXLCRPF*ETGXCKNGDKCHLLTGVREL 286
KT +C + CK GDKCH G REL
Sbjct: 417 KTRMCTKYNTAEGCKFGDKCHFAHGEREL 445
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLSA 301
+ YKT LC F + G C GD+CH G E R +A
Sbjct: 586 SNYKTKLCENFVK-GTCTFGDRCHFAHGENEQRKGAA 621
>08_01_0395 - 3502750-3503033,3504844-3505663
Length = 367
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVREL 286
+ +KT +C + TG C G KCH G EL
Sbjct: 244 SNWKTRICNKWEMTGYCPFGSKCHFAHGAAEL 275
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 200 KTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLSA 301
KT +C + TG C +GD C ELR + A
Sbjct: 521 KTVMCPDWCRTGHCSSGDGCEYAHSQDELRVIDA 554
>03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669
Length = 457
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 300 RHPKYKKXLCRTXHSVGFXPYGXRFH 377
RHP+YK C+ + PYG R H
Sbjct: 416 RHPRYKTLPCQMFAAASGCPYGHRCH 441
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 200 KTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
KT LC + E G C G +C G++ELR
Sbjct: 384 KTELCNKW-ERGACPYGARCRFAHGLQELR 412
>01_01_0521 -
3826257-3826616,3826758-3826918,3826992-3827049,
3827426-3827497,3827582-3827639,3828231-3828347,
3828630-3828782,3829182-3829346,3829814-3830132,
3830276-3830780
Length = 655
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
YKT +C F +G C D C G ELR
Sbjct: 57 YKTRVCETFVTSGRCMFEDGCTFAHGDEELR 87
>02_02_0568 + 11577804-11578676,11578956-11579042,11579043-11579141
Length = 352
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 197 YKTXLCRPF*ETGXCKNGDKCHLL 268
Y+ +C+ + ETG C GD C +
Sbjct: 188 YQPDICKDYKETGYCGYGDSCKFM 211
>02_01_0211 -
1406098-1406227,1406581-1406714,1407241-1407380,
1407639-1407829,1408853-1409346
Length = 362
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 138 IAVSNAPPVNRLLRQQPQIATRPXSAD 218
+ + PP+ RLLR+ P +A SAD
Sbjct: 42 LLIPTPPPLRRLLRRSPLLAAAAVSAD 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,406
Number of Sequences: 37544
Number of extensions: 171420
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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