Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0294
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)               52   3e-07
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)                 28   3.7  

>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
          Length = 527

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/36 (61%), Positives = 25/36 (69%)
 Frame = +2

Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLS 298
           +RYKT LCRPF E+G CK GDKC    G  ELR L+
Sbjct: 153 SRYKTELCRPFEESGTCKYGDKCQFAHGYHELRQLA 188



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/52 (42%), Positives = 27/52 (51%)
 Frame = +3

Query: 222 FKKXGXVKMGINAICSRASANYAIFQRHPKYKKXLCRTXHSVGFXPYGXRFH 377
           F++ G  K G     +          RHPKYK  LCRT H++GF PYG R H
Sbjct: 163 FEESGTCKYGDKCQFAHGYHELRQLARHPKYKTELCRTFHTIGFCPYGPRCH 214



 Score = 34.7 bits (76), Expect = 0.043
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 194 RYKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           +YKT LCR F   G C  G +CH +    E R
Sbjct: 192 KYKTELCRTFHTIGFCPYGPRCHFIHNADEKR 223


>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 4   RRCNWTNRC*LSLKWSKLGAASSAVARFLCTSAXCL 111
           R+C +TNRC L+    +  A     + F C S  C+
Sbjct: 337 RKCGYTNRCTLNTTQEERDAPCKISSWFKCRSGVCI 372


>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
          Length = 321

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLL 268
           Y+  +C+ + ETG C  GD C  L
Sbjct: 179 YQPDICKDYKETGFCGFGDSCKFL 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,465,278
Number of Sequences: 59808
Number of extensions: 181674
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)