Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0294
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ...    38   0.003
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ...    37   0.009
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    35   0.035
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ...    33   0.11 
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    33   0.14 
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin...    33   0.14 
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ...    29   1.3  
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ...    29   2.3  
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ...    29   2.3  
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ...    29   2.3  
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ...    28   4.0  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    27   7.0  

>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 386

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELRN 292
           +KT LC  F  TG C  GDKCH   G  EL N
Sbjct: 270 WKTRLCMKFDITGQCPFGDKCHFAHGQAELHN 301



 Score = 34.3 bits (75), Expect = 0.046
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           YKT +C  F   G C+NG+ C+   G+ +LR
Sbjct: 105 YKTRMCAKF-RAGTCRNGELCNFAHGIEDLR 134


>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 308

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 200 KTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           KT LC  + ETG C  GD C    G++ELR
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR 253



 Score = 30.3 bits (65), Expect = 0.75
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 300 RHPKYKKXLCRTXHSVGFXPYGXRFH 377
           RHP+YK  +CR   +    PYG R H
Sbjct: 257 RHPRYKTEVCRMVLAGDNCPYGHRCH 282



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 194 RYKTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLSAS 304
           RYKT +CR       C  G +CH    + E   L A+
Sbjct: 260 RYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVAA 296


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 34.7 bits (76), Expect = 0.035
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 200 KTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           KT LC  + ETG C  GD C    G+ ELR
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELR 263



 Score = 31.9 bits (69), Expect = 0.25
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 300 RHPKYKKXLCRTXHSVGFXPYGXRFH 377
           RHP+YK  +CR   +    PYG R H
Sbjct: 267 RHPRYKTEVCRMMVTGAMCPYGHRCH 292



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 194 RYKTXLCRPF*ETGXCKNGDKCH 262
           RYKT +CR       C  G +CH
Sbjct: 270 RYKTEVCRMMVTGAMCPYGHRCH 292


>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 384

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLSASS*IQEG 322
           + +KT +C  +  TG C  G KCH   G  EL         +EG
Sbjct: 259 SNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEG 302


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           + YKT +C  +   G C  GD+CH   G  ELR
Sbjct: 204 SNYKTKICDRY-SKGNCTYGDRCHFAHGESELR 235


>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
           (CCCH type) family protein
          Length = 248

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 191 NRYKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           + +KT +C  F   G C  GD+CH   G  ELR
Sbjct: 212 SNFKTKICERF-SKGNCTFGDRCHFAHGEAELR 243


>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 252

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVREL 286
           +KT +C  +  TG C  G  CH   G  EL
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173


>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains Pfam domains PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 378

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLL 268
           Y+  +C+ + ETG C  GD C  L
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFL 259


>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein contains Pfam domains PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 378

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLL 268
           Y+  +C+ + ETG C  GD C  L
Sbjct: 236 YQPDICKDYKETGYCGYGDSCKFL 259


>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein similar to SP|O15541 Zinc finger
           protein 183 {Homo sapiens}; contains Pfam profiles
           PF04396: Protein of unknown function, DUF537, PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
           finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 586

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLL 268
           Y+  +C+ + ETG C  GD C  L
Sbjct: 201 YQPDICKDYKETGYCGYGDSCKFL 224


>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 809

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELR 289
           +KT LC  F     C +G++C    G  ELR
Sbjct: 80  WKTSLCSYFRREASCSHGNECKYAHGEAELR 110


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +2

Query: 197 YKTXLCRPF*ETGXCKNGDKCHLLTGVRELRNLSASS 307
           YKT LC  F +TG C     C    G  ELR    SS
Sbjct: 7   YKTKLCILFNKTGDCSR-PNCTFAHGNAELRRPGESS 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,520,756
Number of Sequences: 28952
Number of extensions: 124548
Number of successful extensions: 297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)