Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0293
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 143 2e-35
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 83 3e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 82 6e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 58 9e-10
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 29 0.45
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.60
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 0.79
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 1.8
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 1.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 143 bits (346), Expect = 2e-35
Identities = 63/98 (64%), Positives = 79/98 (80%)
Frame = +3
Query: 255 FRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQT 434
FRG++SMKEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM++TFIGN+T+IQ
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQE 376
Query: 435 IFKRVSEQFVAMFRRKAFLHWYTGEVWMKWSSRRAESN 548
IF+R+ +QF AMFRRKAFLHWYTGE + AESN
Sbjct: 377 IFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Score = 141 bits (342), Expect = 5e-35
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
M+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A++VPELT Q
Sbjct: 233 MAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQ 292
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL*KKLTSNWRIFRTKTA 321
MFDA NMMVA DPRHGRYLTVA + G+ K++ R +TK +
Sbjct: 293 MFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNS 338
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 82.6 bits (195), Expect = 3e-17
Identities = 37/90 (41%), Positives = 53/90 (58%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + +V E+T Q
Sbjct: 235 VSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQ 294
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL 273
F+ N MV CDPR GRY+ + G+ +
Sbjct: 295 CFEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 66.5 bits (155), Expect = 2e-12
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK--------MAS 401
C +RG + ++V + I+ K + FV+W P KI +CD PP+ ++ A
Sbjct: 316 CLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAV 375
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGE 509
+ NTT+I + R+ +F M+ ++AF+HWY GE
Sbjct: 376 CMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGE 411
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.8 bits (193), Expect = 6e-17
Identities = 36/90 (40%), Positives = 53/90 (58%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALTVPELTLQ 183
+S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + +V E+T Q
Sbjct: 239 VSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQ 298
Query: 184 MFDAKNMMVACDPRHGRYLTVATISGGECL 273
F+ N MV CDPR GRY+ + G+ +
Sbjct: 299 CFEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 62.5 bits (145), Expect = 4e-11
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Frame = +3
Query: 246 CDDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGL--------KMAS 401
C +RG + ++V + +I+++ + FV+W P KI +C PP+ + A
Sbjct: 320 CLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAV 379
Query: 402 TFIGNTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGE 509
+ NTT+I + R+ +F M+ ++AF+HWY GE
Sbjct: 380 CMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGE 415
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 58.0 bits (134), Expect = 9e-10
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Frame = +1
Query: 4 MSGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---TVPEL 174
MS TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ TV ++
Sbjct: 236 MSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDV 295
Query: 175 TLQMFDAKNMMVACDP-RHGRYLTVATISGGE 267
++ KN MV+ +P + ++++ I GE
Sbjct: 296 MRRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +3
Query: 249 DDFRGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNT 419
D +G +V + L I+ + F+ W P + ++A+ P +++ + N
Sbjct: 322 DIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANH 381
Query: 420 TAIQTIFKRVSEQFVAMFRRKAFLHWYTGE 509
T+I ++FKR +Q+ + +R AFL Y E
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQYKKE 411
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 29.1 bits (62), Expect = 0.45
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 106 TPGFAPLTSRGAQQYRALTVPELTLQMFDAKNMMVACDPRHGRYLTVATISGGECL 273
TP A ++ Y A+++ +L + M + +GRYL SGG C+
Sbjct: 446 TPILAVASNSIVSMYNAISLQQLAVFMRHTAPVSALSFSHNGRYLATGDTSGGVCI 501
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 28.7 bits (61), Expect = 0.60
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 301 FASCSSTSFIDIRPLKSSQRSNTSRVEDHTRPSCFWRRTFAASARVQL 158
F+ C T I P+ N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 0.79
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 150 SSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDFRGRMSMKEVDEQLANIQNK 314
S+ N R D + + + STR DR D G S++E+D+Q +N+
Sbjct: 253 SANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRKEFENR 307
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 295 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSL--VTRRPYRPYSRGCLSSSWL 468
+R+ K+ ++++ GYP R+P V L+ +L+ + V PY S S +W+
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWI 267
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +3
Query: 144 TVSSFNCTRADAANVRRQKHDGRV*SSTREVFDRCDDFRGRMSMKEVDEQLANIQNKNST 323
T S N +AD + +K D S RE CDDF + E A I +K
Sbjct: 272 TESDLNRLKADLLRAQLKK-DPNYESLEREYQKACDDFENSLHPSENSNSQATIPSKKRN 330
Query: 324 Y 326
+
Sbjct: 331 F 331
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 428 YGRRVTNEGRSHFKTPRRYVTHGN 357
+ RR NE R++ +PR + THGN
Sbjct: 254 FRRREDNE-RNNSNSPRNFSTHGN 276
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 67 AVNMVPFPRLHFYTPGFAPL 126
A M PF +H Y+P +PL
Sbjct: 1125 ATQMTPFEIVHRYSPALSPL 1144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,043
Number of Sequences: 5004
Number of extensions: 50572
Number of successful extensions: 176
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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