Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0292
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    27   1.2  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   6.3  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    24   8.4  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    24   8.4  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   8.4  

>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 390 YFAXIPKXVFSSTTNFFLWLAIMFLYDYRRXIYVDKLSIF 271
           YF  +P    + TT  FL ++ +++   R  IYV    IF
Sbjct: 254 YFVRLPWLFLNPTTLLFLLISFVYIKPARLLIYVPLFFIF 293


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 134 MNNPPNQSYWFVLREDQSNVILSTNNFVN 220
           M N P+  YW  L    S ++ ++ N+++
Sbjct: 121 MANDPSMKYWLKLTNQLSGLLCASLNYID 149


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 NQSYWFVLREDQSNVILSTNNFVNXNPQIPLQ 244
           N+S W +  +++  +I + N ++  NP  P+Q
Sbjct: 306 NRSPWTI--QEKEKLIKTVNQYLQSNPSSPIQ 335


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
          transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 41 KVFILNTILLFFRTLSCKY 97
          ++ I+NTI++ F T+ C Y
Sbjct: 36 RIRIINTIIISFMTMLCMY 54


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 333 LAIMFLYDYRRXIYVDKLSIFSCFYYD 253
           L + F Y Y + ++V + S  S +YY+
Sbjct: 205 LKLFFRYQYSQFLFVYRESFLSDYYYN 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,217
Number of Sequences: 5004
Number of extensions: 23085
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)