Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0292
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   9.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 366 VFSSTTNFFLWLAIMFLYDYR 304
           +FSST +F+L L +M    Y+
Sbjct: 208 IFSSTISFYLPLFVMVFTYYK 228


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -3

Query: 378 IPKXVFSSTTNFFLWLAIMFLY 313
           +PK  + +  +FF++L+  F++
Sbjct: 267 LPKVPYPTALDFFVFLSFAFIF 288


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 134 MNNPPNQSYWFVLREDQSNVILSTNNFVNXNPQI 235
           +NN     Y   L +   NV+ +  N  + N QI
Sbjct: 367 VNNTQRNEYLLALSDRNQNVLNNDLNLEHVNFQI 400


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 124 KNGYEQPSKSKLLVCT*RRSE 186
           +N YEQPS+  L   T + SE
Sbjct: 346 QNEYEQPSEEDLKRITNQPSE 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,410
Number of Sequences: 438
Number of extensions: 1537
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)