Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0292
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48900.1 68416.m05342 single-strand DNA endonuclease, putativ...    26   9.0  
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family...    26   9.0  

>At3g48900.1 68416.m05342 single-strand DNA endonuclease, putative
           similar to single-strand DNA endonuclease-1 [Oryza
           sativa (japonica cultivar-group)]
           gi|16923283|dbj|BAB72003
          Length = 337

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 161 WFVLREDQSNVILSTNNFVN 220
           WF+L  D  N I+S N F N
Sbjct: 171 WFLLPSDMVNSIISPNKFAN 190


>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
           protein
          Length = 523

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 229 PNSTSRDXIVVETGENRQFIH--INXPPIIVQEHDSQPQEKVCSTTKD 366
           P+   R   +VE+   RQ  +  I  PP   Q+   QPQ+K   T KD
Sbjct: 214 PSGAGRGKPLVESAPIRQEDNRQIRRPPPPPQQQRVQPQQKRAPTVKD 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,886,724
Number of Sequences: 28952
Number of extensions: 107695
Number of successful extensions: 230
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)