Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0291
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ... 116 1e-26
At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative ... 115 2e-26
At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative ... 99 2e-21
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 60 1e-09
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 60 1e-09
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 60 1e-09
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 60 1e-09
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 60 1e-09
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 60 1e-09
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 59 2e-09
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 59 2e-09
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 59 2e-09
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 59 2e-09
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 59 2e-09
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 58 3e-09
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 58 3e-09
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 55 3e-08
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 54 6e-08
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 54 6e-08
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 54 6e-08
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 53 1e-07
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 48 5e-06
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 47 1e-05
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 46 1e-05
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 46 2e-05
At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative ... 46 2e-05
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 44 7e-05
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 42 4e-04
At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative ... 41 5e-04
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 41 6e-04
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 40 0.001
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 39 0.003
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 38 0.003
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 38 0.003
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 38 0.004
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 35 0.031
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 35 0.031
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro... 35 0.041
At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family pro... 33 0.13
At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family pro... 33 0.13
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 33 0.17
At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family pro... 33 0.17
At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family pro... 32 0.29
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 31 0.38
At5g03470.1 68418.m00303 serine/threonine protein phosphatase 2A... 31 0.51
At2g39740.1 68415.m04880 expressed protein 30 1.2
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ... 29 2.0
At4g22400.1 68417.m03237 expressed protein 29 2.7
At3g60630.1 68416.m06784 scarecrow transcription factor family p... 29 2.7
At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family pro... 29 2.7
At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family pro... 29 2.7
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 29 2.7
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 28 3.6
At5g54880.1 68418.m06836 DTW domain-containing protein contains ... 27 6.2
At2g42700.1 68415.m05287 expressed protein 27 6.2
At1g23670.2 68414.m02987 expressed protein contains Pfam profile... 27 6.2
At1g23670.1 68414.m02986 expressed protein contains Pfam profile... 27 6.2
At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,... 27 8.3
At1g22260.1 68414.m02782 expressed protein 27 8.3
>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 237
Score = 116 bits (278), Expect = 1e-26
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
Y L +PV +V A P P++ILEWHYV++G E +P+ GG+Y+ KI FP E+P+KPP I M
Sbjct: 14 YRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITM 73
Query: 183 ITPNGRFKTNTRLCLSITDFHPDT 254
TPNGRF T ++CLS++DFHP++
Sbjct: 74 TTPNGRFMTQKKICLSMSDFHPES 97
Score = 85.8 bits (203), Expect = 2e-17
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
Frame = +2
Query: 137 YFPKGISVQTTFDLHDNTEWQVQDKHTIVPQYYRLSSGHWNPAWSISTILTGLLSFMLEK 316
Y P GI++ T N + Q K + + S WNP WS+S+ILTGLLSFM++
Sbjct: 66 YKPPGITMTTP-----NGRFMTQKKICLSMSDFHPES--WNPMWSVSSILTGLLSFMMDT 118
Query: 317 TPTLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYVEEI-EQQLKQRQEAMLLNQDS 493
+PT GS+ T+ +K+ LA SL N K F +LFPEYVE+ +QQL ++ L +S
Sbjct: 119 SPTTGSVNTTVIEKQRLAKSSLAFNCKTPAFRKLFPEYVEKYNQQQLAEQATTQLTTPES 178
>At5g50430.1 68418.m06245 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme 6 from [Homo
sapiens] GI:14029267, [Mus musculus] GI:14029263;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 243
Score = 115 bits (277), Expect = 2e-26
Identities = 46/84 (54%), Positives = 64/84 (76%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
Y L +PV +V A P P++ILEWHYV++G E +P+ GG+Y+ KI FP E+P+KPP I M
Sbjct: 14 YRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITM 73
Query: 183 ITPNGRFKTNTRLCLSITDFHPDT 254
TPNGRF T ++CLS++DFHP++
Sbjct: 74 TTPNGRFVTQKKICLSMSDFHPES 97
Score = 88.2 bits (209), Expect = 3e-18
Identities = 41/84 (48%), Positives = 55/84 (65%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYV 433
WNP WS+S+ILTGLLSFM++ +PT GS+ TS +K+ LA SL N K+ F +LFPEYV
Sbjct: 98 WNPMWSVSSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYV 157
Query: 434 EEIEQQLKQRQEAMLLNQDSGANE 505
E+ QQ +EA + N+
Sbjct: 158 EKYSQQQVAEEEAATQQTTTSENQ 181
>At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative
similar to Non-Canonical UBiquitin Conjugating Enzyme 1
(NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus]
GI:7363050, [Homo sapiens] GI:7362973; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 309
Score = 99.1 bits (236), Expect = 2e-21
Identities = 35/68 (51%), Positives = 53/68 (77%)
Frame = +3
Query: 48 PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNTRLCL 227
P+ NI EW + ++GP + +EGG YH +I P ++PFKPPS ++TPNGRF+TNT++CL
Sbjct: 35 PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTPNGRFETNTKICL 94
Query: 228 SITDFHPD 251
SI+++HP+
Sbjct: 95 SISNYHPE 102
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 HWNPAWSISTILTGLLSFM-LEKTPTLGSIETSEYQKRCLAAESLE 385
HW P+WS+ T L L++FM LGS++ + ++R LA +S E
Sbjct: 103 HWQPSWSVRTALVALIAFMPTSPNGALGSVDYPKDERRTLAIKSRE 148
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VYHPNINSNGSICLDI 88
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP SPY GG + I FP ++PFKPP + T
Sbjct: 43 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 102
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 103 VFHPNINSNGSICLDI 118
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGSICLDI 88
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 58.8 bits (136), Expect = 2e-09
Identities = 25/59 (42%), Positives = 33/59 (55%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
L DP P +A P N+ W + GP +PYEGG + IIFP ++PFKPP + T
Sbjct: 48 LNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKT 106
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 58.8 bits (136), Expect = 2e-09
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A P ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNINSNGNICLDI 88
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 58.8 bits (136), Expect = 2e-09
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A PV ++ W + GP SPY GG + I FP ++PFKPP + T
Sbjct: 13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VFHPNVNSNGSICLDI 88
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 58.4 bits (135), Expect = 3e-09
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 15 KNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP- 191
K+ P + A PV ++ W + GP +SPY GG + I FP ++PFKPP + T
Sbjct: 15 KDPPTSCIFAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKV 74
Query: 192 -NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 75 FHPNINSNGSICLDI 89
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 58.4 bits (135), Expect = 3e-09
Identities = 22/45 (48%), Positives = 31/45 (68%)
Frame = +3
Query: 57 SNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
+NI EW V++GP+ +PYEGG ++ I FP ++PFKPP TP
Sbjct: 34 NNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTP 78
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A P ++ +W + GP SP+ GG + I FP ++PFKPP + T
Sbjct: 13 LQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VYHPNINSNGSICLDI 88
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ DP +A P ++ +W + GP SP+ GG + I FP ++PFKPP + T
Sbjct: 13 LQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTK 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 VYHPNINSNGSICLDI 88
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +3
Query: 57 SNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT----PNGRFKTNTRLC 224
+NI +W ++KGP ++PYEGG + P +P +PP + +T PN FKT +C
Sbjct: 32 TNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTG-EIC 90
Query: 225 LSI 233
L I
Sbjct: 91 LDI 93
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
RL ++P P ++A P N+ ++ ++ GP +SPYEGG + ++ P E+P P + +T
Sbjct: 16 RLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
Query: 189 P--NGRFKTNTRLCLSI 233
+ R+CL I
Sbjct: 76 KIYHPNIDKLGRICLDI 92
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
RL ++P P ++A P N+ ++ ++ GP +SPYEGG + ++ P E+P P + +T
Sbjct: 16 RLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
Query: 189 P--NGRFKTNTRLCLSI 233
+ R+CL I
Sbjct: 76 KIYHPNIDKLGRICLDI 92
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +3
Query: 9 RLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
RL ++P P ++A P N+ ++ ++ GP +SPYEGG + ++ P E+P P + +T
Sbjct: 16 RLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT 75
Query: 189 P--NGRFKTNTRLCLSI 233
+ R+CL I
Sbjct: 76 KIYHPNIDKLGRICLDI 92
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 54.0 bits (124), Expect = 6e-08
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ V+ GP+ +P++GG + + F ++P KPP++
Sbjct: 13 FKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 54.0 bits (124), Expect = 6e-08
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ V+ GP+ +P++GG + + F ++P KPP++
Sbjct: 13 FKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 54.0 bits (124), Expect = 6e-08
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ V+ GP+ +P++GG + + F ++P KPP++
Sbjct: 13 FKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 53.2 bits (122), Expect = 1e-07
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
+ RL+ DP ++ P +NI+ W+ ++ GPE +P++GG + + F ++P KPP +
Sbjct: 13 FKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRF 72
Query: 183 IT 188
++
Sbjct: 73 VS 74
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 47.6 bits (108), Expect = 5e-06
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPS-NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
++ P +A PV +I W + GP SPY GG + I F ++PFKPP + T
Sbjct: 13 MQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKT 72
Query: 189 P--NGRFKTNTRLCLSI 233
+ + +CL I
Sbjct: 73 KVYHPNIDSKGSICLDI 89
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
NI EW + GP + YEGG+++ + FP+ +P PP++ + + ++ R+C+SI
Sbjct: 65 NIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISI 124
Query: 234 TDFHP 248
HP
Sbjct: 125 --LHP 127
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 46.4 bits (105), Expect = 1e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 84 VKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSITDFHPDTG 257
++GPE + Y G ++ KI P +PF+PP + TP + + R+CL I + P
Sbjct: 51 IEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPK-- 108
Query: 258 TLLGLFLRSLQVC*VLCWRRLL 323
G + SL + VL RLL
Sbjct: 109 ---GAWQPSLNISTVLTSMRLL 127
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 248 GHWNPAWSISTILTGLLSFMLEKTPTLG 331
G W P+ +IST+LT + + E P G
Sbjct: 109 GAWQPSLNISTVLTSMRLLLSEPNPDDG 136
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
NI EW + GP + YEGG+++ + FP+ +P PP++ + + + R+C+SI
Sbjct: 33 NIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISI 92
Query: 234 TDFHP 248
HP
Sbjct: 93 --LHP 95
>At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme from [Oryza
sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134,
SP|P35131; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 177
Score = 45.6 bits (103), Expect = 2e-05
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 48 PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
P P NI W V GP PYE G + + P ++P++PP I
Sbjct: 54 PSPENIFRWEATVNGPVGCPYEKGVFTVSVHIPPKYPYEPPKI 96
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
N+ +W + GP + YEGG+++ + FP +P PP++ + + ++ ++C+SI
Sbjct: 34 NVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISI 93
Query: 234 TDFHP 248
HP
Sbjct: 94 --LHP 96
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 41.5 bits (93), Expect = 4e-04
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 30 PYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
P ++A P NI W + G + + +EG Y + F ++PFKPP +
Sbjct: 53 PGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKV 101
>At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P50550 Ubiquitin-like protein
SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein
ligase) (Ubiquitin carrier protein)
(Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis};
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 160
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +3
Query: 15 KNDPVPYV----TAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYM 182
KN P +V T + N++ WH + G + +EGG++ + F ++P KPP
Sbjct: 19 KNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPLTMHFSEDYPSKPPKCKF 78
Query: 183 ITPNGRFKTNT----RLCLSI 233
P G F N +CLSI
Sbjct: 79 --PQGFFHPNVYPSGTVCLSI 97
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 40.7 bits (91), Expect = 6e-04
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
++ ++ GP +SPYEGG + ++ P E+P P + +T + R+CL I
Sbjct: 4 FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDI 59
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 84 VKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI--TDFHPD 251
++GP +PYE G + K+ +FP PP Y +T + +N +C++ D++P
Sbjct: 46 IEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPS 105
Query: 252 TG 257
G
Sbjct: 106 LG 107
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 30 PYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
P ++A P NI W + G + + +EG Y + F ++PFK P +
Sbjct: 54 PGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKV 102
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 48 PVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
P N+ + GP +PYEGG + I P +PF+PP + T
Sbjct: 27 PKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFST 73
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 45 EPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
E + + E++ GP+ S Y+GG + ++ P +P+K PS+ IT
Sbjct: 23 ETINDGMQEFYVEFNGPKDSLYQGGVWKIRVELPDAYPYKSPSVGFIT 70
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 45 EPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMIT 188
E + + E+ GP+ S YEGG + ++ P +P+K PS+ IT
Sbjct: 23 EMINDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFIT 70
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 35.1 bits (77), Expect = 0.031
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 66 LEWHYVV-KGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
L+ YV GP S Y+GG + K+ P +P+K PS+
Sbjct: 29 LQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSV 66
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 35.1 bits (77), Expect = 0.031
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITP 191
L+ND ++ S + V+ G E +PY G + I FP +P PP+++ +
Sbjct: 283 LENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSG 342
Query: 192 NGRFKTNT----RLCLSI 233
R N ++CLS+
Sbjct: 343 GLRINPNLYNCGKVCLSL 360
Score = 35.1 bits (77), Expect = 0.031
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNTRLC 224
V+ G E +PY G + I FP +P PP++Y + R N C
Sbjct: 952 VIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVYYHSGGLRINPNLYNC 999
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNTRLC 224
V+ G E +PY G + I FP +P PP ++ + R N C
Sbjct: 640 VIIGAEGTPYHDGLFFFDIQFPDTYPSVPPKVHYHSGGLRINPNLYKC 687
>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 907
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 90 GPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNT----RLCLSITDFHPDTG 257
G +PY G + I+ P ++P +PP ++ + R N R+CLS+ + +G
Sbjct: 700 GAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHSGGMRLNPNLYESGRVCLSLLNTWSGSG 759
Query: 258 T 260
T
Sbjct: 760 T 760
>At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 33.1 bits (72), Expect = 0.13
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 49 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTV 83
>At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 145
Score = 33.1 bits (72), Expect = 0.13
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 48 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTV 82
>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
similar to ubiquitin-conjugating enzyme (GI:3319990)
[Mus musculus]; similar to Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
sapiens];
Length = 609
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNT----RLCLSI 233
V+ G + +PY G + I FP +P PP ++ + R N ++CLS+
Sbjct: 367 VIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYNCGKVCLSL 421
>At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 158
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + YEG + K+ +E+P PP++
Sbjct: 47 WTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTV 81
>At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 159
Score = 31.9 bits (69), Expect = 0.29
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 72 WHYVVKGPEKSPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + YEG + K+ +++P PP++
Sbjct: 47 WTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTV 81
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family protein
low similarity to ubiquitin-conjugating BIR-domain enzyme
APOLLON [Homo sapiens] GI:8489831, ubiquitin-conjugating
enzyme [Mus musculus] GI:3319990; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1102
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 81 VVKGPEKSPYEGGYYHXKIIFPREFPFKPPSIYMITPNGRFKTNT----RLCLSI 233
V+ G +PY+ G + P ++P PPS Y + R N ++CLS+
Sbjct: 885 VIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHSGGWRLNPNLYEEGKVCLSL 939
>At5g03470.1 68418.m00303 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'alpha) similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 495
Score = 31.1 bits (67), Expect = 0.51
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 368 AAESLEINIKNKMFCELFPEYVEEIEQQLKQRQ 466
A L NIK +MF E+ PE EE +QQ +++Q
Sbjct: 431 AVHGLSANIK-RMFMEMDPELFEECQQQYEEKQ 462
>At2g39740.1 68415.m04880 expressed protein
Length = 474
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 31 HMLRPNLXRPTYWNGITSLKGRRKVPTKG 117
HM N RP Y NG+ S + K+P++G
Sbjct: 436 HMNGVNSARPAYTNGVNSARPPSKIPSQG 464
>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
(SCL11) identical to cDNA scarecrow-like 11 (SCL11)
mRNA, partial cds gi:4580526
Length = 172
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +3
Query: 189 PNGRF---KTNTRLCLSITDFHPDTGTLLG 269
PNG F +T + C+ ITD+ P G LLG
Sbjct: 33 PNGSFPSLRTVAKKCVVITDWDPQPGALLG 62
>At4g22400.1 68417.m03237 expressed protein
Length = 327
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 203 QDKHTIVPQYYRLSSGHWNPAWSISTIL-TGLL-SFMLEK-TPTLGSIETSEYQKRC-LA 370
+D +T++ Y +SG W WS++++L G+ ++ +E +P+ I + KR
Sbjct: 182 RDTYTLLIYYVAKTSGRWEQNWSVASMLVVGIFDTWYIESISPSPDKISIEIWPKRYDFT 241
Query: 371 AESLEINIKN 400
++ E N+ N
Sbjct: 242 FQTQEWNVSN 251
>At3g60630.1 68416.m06784 scarecrow transcription factor family
protein scarecrow-like 6, Arabidopsis thaliana,
EMBL:AF036303
Length = 623
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -3
Query: 233 NTEAQSCV---CLEPAIRCYHVNR-RWFERKFPWEN 138
N EA + + C++P+I+ NR RW ER PW +
Sbjct: 527 NAEAATSIERFCVQPSIQKLLTNRYRWMERSPPWRS 562
>At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 147
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 WHYVVKGPEK-SPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 49 WTGTIIGPHNVTVHEGRIYQLKLFCDKDYPEKPPTV 84
>At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 WHYVVKGPEK-SPYEGGYYHXKIIFPREFPFKPPSI 176
W + GP + +EG Y K+ +++P KPP++
Sbjct: 48 WTGTIIGPHNVTVHEGRIYQLKLFCDKDYPEKPPTV 83
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRC 364
W+PA ++S+I +LS + T + Y K C
Sbjct: 107 WSPAMTVSSICISILSMLSSSTEKQRPTDNDRYVKNC 143
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 6 LRLK-NDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGY 122
LRLK +DP+ + A PS L+W K P SP GG+
Sbjct: 240 LRLKRDDPLTAIIAHTDPSEPLKWELKQK-PGLSPPRGGF 278
>At5g54880.1 68418.m06836 DTW domain-containing protein contains
Pfam domain, PF03942: DTW domain
Length = 394
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +2
Query: 146 KGISVQTTFDLHDNTEWQVQDKHTIVPQYYRLSSGHWNPAWSISTILTGLLSFMLEKTPT 325
K + V T FD+HD E+ ++ I ++ + H + + + + + L K +
Sbjct: 98 KNVGVTTVFDVHDEAEFLIR---VIGSGCSKIDTNHLDSEYRVENVASLELDDSF-KLGS 153
Query: 326 LGSIETSEYQKRCLAAE--SLEI 388
G++E E +K + + SLEI
Sbjct: 154 SGNVENLESEKNVVLVDHGSLEI 176
>At2g42700.1 68415.m05287 expressed protein
Length = 788
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/67 (22%), Positives = 35/67 (52%)
Frame = +2
Query: 287 TGLLSFMLEKTPTLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYVEEIEQQLKQRQ 466
T L M+++ GS+ ++ + L E++ +N++ + PE ++ + + L Q Q
Sbjct: 376 TPYLEAMIDRKTKDGSVLVKKWLQEALRRENISVNVRARPGYATKPE-LQAMIKALSQSQ 434
Query: 467 EAMLLNQ 487
++L N+
Sbjct: 435 SSLLKNK 441
>At1g23670.2 68414.m02987 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 264
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 389 NIKNKMFCELFPEYVEEIEQQLK 457
N+K K E +PE EE+++QLK
Sbjct: 25 NVKTKSVSETYPENREELKKQLK 47
>At1g23670.1 68414.m02986 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 219
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 389 NIKNKMFCELFPEYVEEIEQQLK 457
N+K K E +PE EE+++QLK
Sbjct: 25 NVKTKSVSETYPENREELKKQLK 47
>At5g63810.1 68418.m08008 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939621 from
[Lycopersicon esculentum]; contains Pfam profile
PF01301: Glycosyl hydrolases family 35
Length = 741
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 209 CLEPAIRCYHVNRRWFE 159
C EP+ R YHV R WF+
Sbjct: 696 CGEPSQRWYHVPRSWFK 712
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 311 EKTPTLGSIETSEYQKRCLAAESLEINIKNKMFCELF----PEYVEEIEQQLKQRQEAML 478
E L S++TSE +K+ L+ + + +++K CE VEE+E L++ E+
Sbjct: 420 EMETLLESVKTSEDKKQELSLKLSSLEMESKEKCEKLQADAQRQVEELE-TLQKESESHQ 478
Query: 479 LNQDSGANEV 508
L D A EV
Sbjct: 479 LQADLLAKEV 488
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,766
Number of Sequences: 28952
Number of extensions: 284873
Number of successful extensions: 930
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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