Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0290
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)                     30   1.1  
SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6)                   29   1.9  
SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)            28   4.5  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               28   5.9  
SB_57702| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)
          Length = 353

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/63 (38%), Positives = 30/63 (47%)
 Frame = +1

Query: 139 TCSYNIVTDINAHFSVQYLLFNLELGQNREIYRKIT*RRVKNACEGGIDHKSSY*I*KIP 318
           TCS NIVTD++ HFS Q+  F+    +     RK+  R   N  E      S Y   K  
Sbjct: 292 TCSGNIVTDVSDHFS-QFCFFSSAKAKPITEKRKV--RDFPNFSEEKFTFNSPYKGDKNL 348

Query: 319 NKD 327
           NKD
Sbjct: 349 NKD 351


>SB_27420| Best HMM Match : PHB_acc (HMM E-Value=6.6)
          Length = 291

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 139 TCSYNIVTDINAHFSVQYLLFN 204
           TCS NIVTD++ HFS Q+  F+
Sbjct: 34  TCSGNIVTDVSDHFS-QFCFFS 54


>SB_4543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 139 TCSYNIVTDINAHFSVQYLLFN 204
           TCS NIVTD++ HFS Q+  F+
Sbjct: 97  TCSGNIVTDVSDHFS-QFCFFS 117


>SB_35102| Best HMM Match : Spore_permease (HMM E-Value=2.7)
          Length = 464

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 RHYFYINSLCTTCSYNIVTD-INAHFSVQYLLFNLELGQNREIYRKI 243
           R  F++N  C   S+ +  + +   F++ YLL  + L  N  IYR +
Sbjct: 400 RASFFVNHNCLRASFFVNHNCLRTPFAIVYLLMRIILSFNNHIYRGV 446


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 104 LDITFT*TLFALHALIIL---SPTLTHTSPSNIC 196
           L +T + TLF   +L +    SPTL HT P+++C
Sbjct: 794 LCVTQSPTLFVTQSLTLYVTQSPTLCHTKPNSLC 827


>SB_57702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 177 LLRPIFAFQFRIGPKQRNISQD 242
           +++ I+A +F IGPK+RN+ ++
Sbjct: 6   MMQKIYAAEFYIGPKRRNVMRE 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,513
Number of Sequences: 59808
Number of extensions: 316221
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)