Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0288
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 67 1e-11
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 52 3e-07
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 32 0.50
07_01_1033 + 8958317-8959254,8959438-8959673,8960440-8960486,896... 31 1.2
11_03_0128 - 10437407-10438049,10438097-10438272 29 2.7
10_08_0520 - 18495118-18498237 29 3.5
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617... 29 3.5
01_01_1127 + 8930593-8932681,8932812-8933401 29 3.5
09_04_0500 - 18120287-18122233 29 4.7
02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600 29 4.7
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 8.2
06_01_0326 + 2372176-2373057,2373146-2373610 28 8.2
05_06_0224 + 26546066-26546830 28 8.2
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 28 8.2
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/49 (65%), Positives = 38/49 (77%)
Frame = +2
Query: 503 AGNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKR 649
A NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+
Sbjct: 8 ANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQ 56
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 12/63 (19%)
Frame = +2
Query: 497 TGAGNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYLKNVIE 640
T NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL++VI
Sbjct: 6 TEPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIA 65
Query: 641 KKR 649
K+
Sbjct: 66 HKQ 68
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 402 IRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERR 292
++T T + +S RPR D+E ++ L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>07_01_1033 +
8958317-8959254,8959438-8959673,8960440-8960486,
8960683-8960733
Length = 423
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 292 LGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTAR 146
L + D + H VLI +W L A+ ++S G T RTAR
Sbjct: 10 LADSDGASPPPHWVLIDIWCYIGDLPNATTAESTTSTGLPIKVTFRTAR 58
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 193 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 95
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 320 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 421
RAR+ L A G + +W A+V R LGNV +
Sbjct: 751 RARILLSKARERGGTERVWMKSAIVERELGNVDE 784
>06_01_0816 -
6171189-6171255,6171277-6171441,6172037-6172618,
6173451-6173761
Length = 374
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 83 GLVVLGPEDWSEISVLNWSQKIS 15
G VV GP W EI + WSQ+ S
Sbjct: 42 GRVVAGPYCWQEIDIQEWSQQQS 64
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 320 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 421
RAR+ L A G + +W A+V R LGNV +
Sbjct: 656 RARILLSKARERGGTERVWMKSAIVERELGNVDE 689
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 275 AVSVPERRSSDEYGRRARVELRSASWHR 358
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>02_02_0406 - 9888167-9888570,9890168-9890248,9892207-9892600
Length = 292
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 351 GTAVFKSSGGCSLSWFGCWEMSATGRLIL*LAVRTVFFVFRVKYTLIKKREPETLRNHAK 530
G+ + CS+ F C+E++A G +I L T FF+ R K +I T N
Sbjct: 172 GSTLLALGSSCSVPLFWCYEITAWGLVI--LYAGTAFFL-RRKAAVILDEGDYTPHNVGL 228
Query: 531 RVVQTSV 551
+++T++
Sbjct: 229 EMLETTI 235
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 244 WVWRLTDHLTTASNGSDSSSRGT 176
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -2
Query: 367 LKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSS 188
+ +VPR G + +RG S G+G SV +++ IW+ DH+ + SN SD
Sbjct: 221 IHNSVPRSGGLIRDSMHHFGIRGESDGDGISVMGSSN---IWI----DHV-SMSNCSDGL 272
Query: 187 SRGTEYSTTCRTARRAYSK 131
T+ ST + ++K
Sbjct: 273 IDITDGSTAITISNSHFTK 291
>05_06_0224 + 26546066-26546830
Length = 254
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 293 RRSSDEYGRRARVELRSASWHRGLQELWRLFAVVVRMLGNVGDWPL 430
RR D YG + + + H G+++ + A++ R LG W +
Sbjct: 23 RRVVDMYGHHVGFKAKVVALHGGIRQARAVHAILSRQLGGEKKWEI 68
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 258 WAFEVTL--SPFPSDAPLTSMDV-ERALSFAPRRGTAVFKSSGGCSLSW 395
+ FE TL PF + + DV +A+ A A F S GGC++SW
Sbjct: 54 FTFEFTLHTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,248,632
Number of Sequences: 37544
Number of extensions: 386672
Number of successful extensions: 1053
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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