Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0288
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 70 1e-12
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 70 1e-12
Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical pr... 29 2.4
U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of c... 29 3.2
AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrat... 29 3.2
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 28 5.6
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr... 28 5.6
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical ... 28 5.6
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 27 9.8
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +2
Query: 509 NPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKRV 652
N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E K +
Sbjct: 12 NSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEI 59
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +2
Query: 509 NPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKRV 652
N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E K +
Sbjct: 12 NSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEI 59
>Z80789-1|CAB02551.1| 708|Caenorhabditis elegans Hypothetical
protein F48C11.2 protein.
Length = 708
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = -2
Query: 334 LNARSTSILVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCR 155
+++ +++I + +S + S T+ A L + ++T T A NG S G+ +TTC+
Sbjct: 175 VSSTTSNISLTSSSTQSYSSSTAGATSSLFTI-KVTQSTTAAGNGQGGSGSGSA-TTTCK 232
Query: 154 TARRAYSKARMACDTGGKASWLLKAW 77
+ S A K+ L W
Sbjct: 233 CSAGDVSATTAASACSEKSGCLKNQW 258
>U55366-1|AAA97980.2| 430|Caenorhabditis elegans Suppressor of clr
protein 1 protein.
Length = 430
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 273 TLSPFPSDAPLTSMDVERALSFAPRRGTA 359
T SP PSD S+DV+R L+F R A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426
>AF419335-1|AAL15971.1| 430|Caenorhabditis elegans multisubstrate
adaptor proteinSOC-1 protein.
Length = 430
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 273 TLSPFPSDAPLTSMDVERALSFAPRRGTA 359
T SP PSD S+DV+R L+F R A
Sbjct: 398 TRSPTPSDIEYISVDVDRTLAFKQMRRAA 426
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -2
Query: 220 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 95
++ S G SSSRG+ Y T R+++R+ S++R +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147
>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
ZK370.4b protein.
Length = 1353
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 329 VELRSASWHRGLQELWR 379
VE R+ASW G+ LWR
Sbjct: 993 VETRAASWFNGMSSLWR 1009
>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
ZK370.4a protein.
Length = 1342
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 329 VELRSASWHRGLQELWR 379
VE R+ASW G+ LWR
Sbjct: 982 VETRAASWFNGMSSLWR 998
>AF039038-1|AAK21435.1| 877|Caenorhabditis elegans Hypothetical
protein K06A5.4 protein.
Length = 877
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 476 NTENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATTRSEAQRALY 318
N+ENEK R+ E + R E +QR + A +R E + A Y
Sbjct: 155 NSENEKERNRREREEQQTKERERRLEEEKQRRDAEAEAERRRKEEEELEEANY 207
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 450 EQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRSGTET 277
E+R +L+GQSP F +R + R R +A++ +A+ E R+ +T
Sbjct: 1383 EERSGLLAGQSPDFSEVRAQIEEENRMKERSRKREAKK---KAVEKEKKEHRKEPKKT 1437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,045
Number of Sequences: 27780
Number of extensions: 309032
Number of successful extensions: 916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -