Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0288
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 70 2e-12
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 69 3e-12
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein... 35 0.060
At2g32140.1 68415.m03928 disease resistance protein (TIR class),... 32 0.42
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ... 31 0.56
At5g63540.1 68418.m07975 expressed protein ; expression support... 31 0.73
At1g31370.1 68414.m03839 expressed protein ; expression supporte... 29 2.2
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /... 29 3.9
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 28 5.2
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC... 28 6.8
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ... 28 6.8
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 28 6.8
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = +2
Query: 509 NPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKR 649
N KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI K+
Sbjct: 10 NQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQ 56
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 68.9 bits (161), Expect = 3e-12
Identities = 32/47 (68%), Positives = 39/47 (82%)
Frame = +2
Query: 509 NPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKR 649
N KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI K+
Sbjct: 10 NITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQ 56
>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
nap gene, Arabidopsis thaliana, gb:AJ222713
Length = 341
Score = 34.7 bits (76), Expect = 0.060
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 301 GASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEY 170
G +G ++V S+ H+ + W + D L T G++ SSRG Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308
>At2g32140.1 68415.m03928 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 371
Score = 31.9 bits (69), Expect = 0.42
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Frame = -2
Query: 511 VSGSRFLISVYLTRKTK-NTVRTASYNIKRPVADI-SQHPNHDSEQPP--ELLKTAVPRR 344
VS + +Y T + +T+R S N V SQ PN D E LLK V
Sbjct: 224 VSERKLTTDMYDTPEVSTSTMRKVSSNNGVGVGTFKSQKPNFDDEDDDGDSLLKALV--- 280
Query: 343 GAKLNARSTSILVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYST 164
AKL A +TSI+ A L S A ++ + L +SNG S S+
Sbjct: 281 -AKLVASTTSIVAAYAELQRAHSDAIQAAETVVVDVKTLSELIRSSNGGGGGSGSGSGSS 339
Query: 163 TCRTARRAYSKARMACDTGGKAS 95
RR+ + ++ + G +S
Sbjct: 340 LENQPRRSKVRKQVWAEVLGISS 362
>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
similar to PR-1a protein [Nicotiana tabacum] GI:19944;
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 164
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/85 (27%), Positives = 35/85 (41%)
Frame = -2
Query: 358 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRG 179
A R+G S S + G +L S A V +WV +D++ ++ SD G
Sbjct: 62 AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121
Query: 178 TEYSTTCRTARRAYSKARMACDTGG 104
RT+ A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145
>At5g63540.1 68418.m07975 expressed protein ; expression supported
by MPSS
Length = 602
Score = 31.1 bits (67), Expect = 0.73
Identities = 31/108 (28%), Positives = 46/108 (42%)
Frame = -2
Query: 490 ISVYLTRKTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSI 311
+ ++R + TAS + +R +DI + + + T GA ARS +
Sbjct: 318 VGATVSRVEHMQIDTASAHGERTFSDIHS-TSSNIHRAASTAGTGTSCSGACSGARSFAN 376
Query: 310 LVRGASLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYS 167
V G SL +VTS + I R+ D TT GSDS E+S
Sbjct: 377 NVGGNSLDQTSNVTSFVEEMHIDTGRVRD-TTTHIYGSDSGGVAAEFS 423
>At1g31370.1 68414.m03839 expressed protein ; expression supported
by MPSS
Length = 193
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 462 KTPFEQRVTILSGQSPTFPNIRTTTANSLQSS*RPRCH 349
K+ FE+ I S P P++RTT+ NSL S CH
Sbjct: 126 KSLFEKHPDIASKFRPKNPHLRTTSLNSLLSLTEILCH 163
>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein weak
similarity to polygalacturonase [Lycopersicon
esculentum] GI:4325090; contains PF00295: Glycosyl
hydrolases family 28
Length = 471
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 295 SLGNGDSVTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARRAYSKARM 122
S G G + HR LI+ LTD + T NG+ +GT + R Y++ +
Sbjct: 125 SYGRGRELPGRRHRSLIYGQNLTDVVITGENGT-IDGQGTVWWDWFRNGELNYTRPHL 181
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 241 VWRLTDHLTTASNGSDSSSRGTEYSTT 161
+W + DH+T A GSDS S G+ + T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259
>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
Drosophila melanogaster, EMBL:AF186472
Length = 566
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 35 SIPKFHSSLQDLKQPSLQEPRCLATRV 115
++ K SS +DL L+ PRCLA+ V
Sbjct: 21 NVSKGKSSSEDLTNVKLESPRCLASNV 47
>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
putative nearly identical to 67kD chloroplastic
RNA-binding protein, P67 [Arabidopsis thaliana]
GI:9755842
Length = 688
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +2
Query: 305 DEYGRRARVELRSASWHRGLQELWRL----FAVVVRMLGNVGDW 424
D YGR V++ + + R E WR+ F+ ++R+ G G++
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 282
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 320 RARVELRSASWHRGLQELWRLFAVVVRMLGNV 415
RAR+ L A G + +W A+V R LGNV
Sbjct: 745 RARMLLAKARERGGTERVWMKSAIVERELGNV 776
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,972,899
Number of Sequences: 28952
Number of extensions: 291915
Number of successful extensions: 854
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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