Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0286
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 156 2e-39
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 97 2e-21
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 96 4e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 77 3e-15
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 28 0.93
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 1.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 2.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.8
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.7
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 26 3.7
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 5.0
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 5.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 6.5
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 6.5
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 8.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 156 bits (379), Expect = 2e-39
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 436
R+NVY+NEA+GGKYVPRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGH
Sbjct: 46 RLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGH 105
Query: 437 YTEGAELVDSVLDVVRKEAEGCDCCRVF 520
YTEGAEL D+VLDVVR+EAE CD + F
Sbjct: 106 YTEGAELADAVLDVVRREAEACDALQGF 133
Score = 74.5 bits (175), Expect = 1e-14
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQ 251
MREIVHIQAGQCGNQ+GA FW I+DEHG+D+ G Y G S+ Q
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQ 43
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 511 QGFQXXXXXXXXXXXXXXXXXXXKIREEYPDR 606
QGFQ KIREEYPDR
Sbjct: 131 QGFQLTHSLGGGTGSGMGTLLLSKIREEYPDR 162
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 96.7 bits (230), Expect = 2e-21
Identities = 38/80 (47%), Positives = 56/80 (70%)
Frame = +2
Query: 263 NVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 442
+ +++E GKYVPR++ VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT
Sbjct: 50 STFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYT 109
Query: 443 EGAELVDSVLDVVRKEAEGC 502
G ELVD V D +R+ A+ C
Sbjct: 110 VGKELVDEVTDKIRRIADNC 129
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
MREI+ I GQ G QIG WE+ EHGI G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 95.9 bits (228), Expect = 4e-21
Identities = 37/78 (47%), Positives = 57/78 (73%)
Frame = +2
Query: 269 YYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEG 448
+++E GK+VPR++ VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G
Sbjct: 56 FFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVG 115
Query: 449 AELVDSVLDVVRKEAEGC 502
E++DSVL+ +R+ A+ C
Sbjct: 116 KEMIDSVLERIRRMADNC 133
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 123 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNAS 263
MRE++ + GQ G QIG WE+ EHGI G + +S++ N S
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNS 47
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 76.6 bits (180), Expect = 3e-15
Identities = 30/91 (32%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Frame = +2
Query: 257 RINVYYNEASGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAK 430
R +V++ ++ +Y+PRA+++DLEP ++++ S +G ++ P+N + ++ GAGNNWA
Sbjct: 47 RKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWAN 106
Query: 431 GHYTEGAELVDSVLDVVRKEAEGCDCCRVFS 523
G Y+ + + ++D++ +EA+G D FS
Sbjct: 107 G-YSHAERIFEDIMDMIDREADGSDSLEGFS 136
Score = 50.4 bits (115), Expect = 2e-07
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3
Query: 126 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATG 224
REI+ +QAGQCGNQIG++FW+ + EHGI G
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDG 35
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 414 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 319
P+ PK L R I PNGPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 287 LKLRYSRH*CVKLQVGVAAVSTRGVNAVLVRDYFPELCSDLIPALTRLDVDDFPHDCT 114
++L SR C + G+ + V + +Y P S+ + + RLDVD F H T
Sbjct: 599 VRLGISRKRCERYPFGILCIIFT-VLEIAAEEYSPNWESEELRLVNRLDVDSFLHPKT 655
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 529 ELAENPATIAAFCFFSNYIQYRINQFSPLCVMSFRPVIPRPRLSEDEVVRSEDLPKRPGT 350
+L P AA+ +S++ + FSP + P + P ++ V LP+ P +
Sbjct: 103 QLPNEPQNSAAYTTYSSFPNALFDDFSPNNPLDTDPFLTSPGNKQNTVDSFRPLPETPVS 162
Query: 349 DG 344
G
Sbjct: 163 PG 164
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 356 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 457
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 425 AKGHYTEGAELVDSVLDVVRKEAEGCDCCRVFS*LILWEEVLD 553
A+GH G ELV + D +RK++E V I+ E L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALEVCPDRIVCNEFLE 225
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -1
Query: 191 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 87
+F E+ + P +LD+DD + + P E+N
Sbjct: 36 FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 88 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 246
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 88 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 246
F S S S +STS RV++ ++ SSG + T+ + V +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -2
Query: 148 AWMWTISLMIALKIWNPPNRI 86
AW+W ++LM+ + PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 464 NQPVQPPLCNVLSPSYSPPQT 402
N+P +PP+ N + PPQT
Sbjct: 86 NEPAKPPIPNAATKPTFPPQT 106
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 102 FQIFSAIMREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLNASMS 269
F + S I I C + +W+V+ G+ TGA S SD L S+S
Sbjct: 807 FSVLSLICPSRTLIIDKACVEKTWPYWWDVLHQSFGVKLTGATSVASD-PLKGSIS 861
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,710
Number of Sequences: 5004
Number of extensions: 53799
Number of successful extensions: 174
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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