Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0283
         (349 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   3.6  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    20   8.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   8.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   8.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 39  LICFYYLLRCFSIDKT 86
           L+C YY  R F I  T
Sbjct: 295 LLCIYYFCRAFIIFPT 310


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 109 KIEHCDRNVLSIEKQR 62
           + EHCDR  + +   R
Sbjct: 39  RCEHCDRQFVQVANLR 54


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 334 PVTSYFNLNSSSSVPTS*KWVLAVFIRVMAPYIVPLRSWRSAP 206
           P+TS  + +SSS      + V A  + ++A    P    RS P
Sbjct: 378 PITSSGSTDSSSQSVEDPQQVEAAIVHLIANLPSPGSDQRSTP 420


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 109 KIEHCDRNVLSIEKQR 62
           + EHCDR  + +   R
Sbjct: 192 RCEHCDRQFVQVANLR 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,253
Number of Sequences: 336
Number of extensions: 1561
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)