Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0283
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   1.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   4.4  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   7.8  
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    24   7.8  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 299 FSANLMKVGSRSFHTCNGTLYSA 231
           F  N   V  RSFHTCN +L SA
Sbjct: 253 FINNHSNVFRRSFHTCNFSLKSA 275


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
 Frame = +2

Query: 221 AP*WHYIGCH-----YTYENCENPLS 283
           AP WHYI C      Y  E+  NP S
Sbjct: 451 APPWHYIPCQSWLVWYPSEDASNPAS 476


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 92  VTVFYFNKSINNNSQFLISKSPS 160
           V  F  + SI+NN++  I+KSPS
Sbjct: 752 VKSFNDSSSISNNTKISITKSPS 774


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 109 KIEHCDRNVLSIEKQRSK 56
           KI   DR++LSI++QR K
Sbjct: 7   KINDKDRSILSIKEQRDK 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,336,883
Number of Sequences: 5004
Number of extensions: 23026
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)