Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0279
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 29 0.52
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 28 0.90
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.1
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 26 3.6
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 3.6
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 26 4.8
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 8.4
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.4
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 29.1 bits (62), Expect = 0.52
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 214 C*SKSPNSTSRDKIVVETG-ENRQFIHINEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKI 390
C + +P++++ ++ E N+ F+ + E I + D EK+ + D++ +
Sbjct: 704 CNTNNPDASTSVPVLEELQLRNKLFLTLLEDSI--GDGDVTEDEKISIARLEANIDKALL 761
Query: 391 RLLLKLCLEDRFKNINK-QKTL 453
+L+ K CLE+R + + + KTL
Sbjct: 762 QLIQKACLEERIERVYELTKTL 783
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.3 bits (60), Expect = 0.90
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +1
Query: 214 C*SKSPNSTSRDKIVVETGENRQFIHINEPPIIVQEHDSQPQEKVCST-TKDVFWDRSKI 390
C S +PN +R +VVE E I + + + PQ+++ K+ WD
Sbjct: 687 CFSDTPNKKNRITMVVEPLEKGISNDIENGKVNI----NWPQKRISEFFQKNYDWDLLAS 742
Query: 391 RLLLKLCLEDRFKNINKQKTLWHDIASHVGTTADECCKK 507
R + +DR NI + TL D+ +V + E K+
Sbjct: 743 RSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQ 781
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 333 LAIMFLYDYRRFIYVDKLSIFSCFYYD 253
L + F Y Y +F++V + S S +YY+
Sbjct: 205 LKLFFRYQYSQFLFVYRESFLSDYYYN 231
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 390 YFASIPKDVFSSTTNFFLWLAIMFLYDYRRFIYVDKLSIF 271
YF +P + TT FL ++ +++ R IYV IF
Sbjct: 254 YFVRLPWLFLNPTTLLFLLISFVYIKPARLLIYVPLFFIF 293
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 23 PCNYVYKVFILNTILLFFRTLSCKY 97
P + ++ I+NTI++ F T+ C Y
Sbjct: 30 PLTWPIRIRIINTIIISFMTMLCMY 54
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 454 WHDIASHVGTTADECCKK 507
WH I+ +GT + E C+K
Sbjct: 436 WHSISKKLGTKSPESCRK 453
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 554 LFFFKSPNISSP*ISDF 504
+FFFKS NISS +S F
Sbjct: 639 VFFFKSKNISSSRLSSF 655
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 283 FIHINEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKIRLLLKLCLEDRFKNI-NKQKTLWH 459
F +NE E + + S D+ DR+++ + L+ + K+I KQ+ + H
Sbjct: 252 FERVNEIRPDKDEENDESDVSQTSKFDDIIPDRNQLLITLRDLASESSKSIGKKQRKVLH 311
Query: 460 DIASHVGTTADE 495
+ +V T +E
Sbjct: 312 QVFRNVLQTIEE 323
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +2
Query: 134 MNNPPNQSYWFVLREDQSNVILSTNNFVNQN 226
M N P+ YW L S ++ ++ N+++ +
Sbjct: 121 MANDPSMKYWLKLTNQLSGLLCASLNYIDSS 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,749
Number of Sequences: 5004
Number of extensions: 48703
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -