Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0277
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 132 6e-32
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 58 1e-09
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 57 2e-09
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 56 4e-09
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 56 6e-09
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 55 1e-08
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 45 8e-06
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 44 2e-05
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 43 3e-05
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 43 4e-05
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 39 5e-04
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 39 5e-04
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 28 1.0
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 28 1.3
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 27 1.8
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 27 2.3
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 27 2.3
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 27 2.3
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 27 2.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 2.3
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 27 3.1
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 4.1
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 7.1
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.1
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 9.4
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 9.4
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 9.4
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 132 bits (318), Expect = 6e-32
Identities = 53/82 (64%), Positives = 66/82 (80%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYM 182
YL L+ +PV V A+P NILEWHY++ GP +PYEGG YHG +IFP ++PFKPP+I M
Sbjct: 14 YLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRM 73
Query: 183 ITPNGRFKTNTRLCLSITDFHP 248
ITP+GRF+TNTRLCLS +DFHP
Sbjct: 74 ITPSGRFQTNTRLCLSFSDFHP 95
Score = 61.7 bits (143), Expect = 9e-11
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +2
Query: 254 WNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRCLAAESLEINI-KNKMFCELFPEY 430
WNP+W +STIL GL+SFM T G I TSE +R A ++ NI N F +FPE
Sbjct: 98 WNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKRFNIMDNPKFLIMFPEL 157
Query: 431 VEEIEQQLKQRQEAMLLNQDSGANEVPLS 517
+++ + + + L + + P+S
Sbjct: 158 IDKNREDIAKAAAEAALIEPQQIHSTPVS 186
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP 191
L DP +A PV ++ W + GP SPY GG + I FP ++PFKPP + T
Sbjct: 13 LGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTR 72
Query: 192 --NGRFKTNTRLCLSI 233
+ +N +CL I
Sbjct: 73 IYHPNINSNGSICLDI 88
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYM 182
Y L+ P+P + V N+ W GP S Y GG +H + FP ++PF+PP+I
Sbjct: 16 YSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEF 75
Query: 183 ITP--NGRFKTNTRLCLSI 233
T + F + +CL+I
Sbjct: 76 TTRIYHPNFDSEGNVCLAI 94
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 56.0 bits (129), Expect = 4e-09
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3
Query: 12 LKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP 191
L DP P + A P N+ + ++GP++S YEGG +H ++ P E+P PP++ +T
Sbjct: 14 LTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTK 73
Query: 192 --NGRFKTNTRLCLS 230
+ R+CLS
Sbjct: 74 IYHPNVDKLGRICLS 88
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 55.6 bits (128), Expect = 6e-09
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +3
Query: 15 KNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP- 191
KN P + +I EW ++ GPE + YEGG++H + FP+++P PP + T
Sbjct: 19 KNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEI 78
Query: 192 -NGRFKTNTRLCLSITDFHP 248
+ N +C+SI HP
Sbjct: 79 WHPNVHPNGEVCISI--LHP 96
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYM 182
+ R++ DP V+A PV N++ W+ V+ GP +P+E G + + F ++P KPP +
Sbjct: 13 FKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKF 72
Query: 183 ITP--NGRFKTNTRLCLSI 233
++ + N LCL I
Sbjct: 73 VSTMFHPNVYANGELCLDI 91
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 45.2 bits (102), Expect = 8e-06
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIY----MITPNGRFKTNTRLCL 227
++ W V++GP ++PYEGG + I +P PPS+Y ++ PN + TN +C+
Sbjct: 33 DMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISW-TNGEVCM 91
Query: 228 SITDFH 245
I H
Sbjct: 92 DILKTH 97
Score = 26.6 bits (56), Expect = 3.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 251 HWNPAWSISTILTGLLSFM 307
HW+PAWS+ + ++S +
Sbjct: 97 HWSPAWSLQSACLAIISLL 115
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 3 YLRLKNDPVPYVTAEPV-PSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSI 176
Y L + +TA P + W +++GP+ +P+EGG Y + FP ++P PP++
Sbjct: 14 YKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTL 72
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 43.2 bits (97), Expect = 3e-05
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +3
Query: 87 KGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMIT----PNGRFKTNTRLCLSI 233
+GPE +PYEGGY+ I P ++PF+PP + T PN +T +CL I
Sbjct: 41 RGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGA-ICLDI 92
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +3
Query: 30 PYVTAEP-VPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP--NGR 200
P ++A P SN+L W + GP + YEG + + FP +P+ PP+I +P +
Sbjct: 46 PGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPN 105
Query: 201 FKTNTRLCLSI 233
+ +CL I
Sbjct: 106 VDMSGNICLDI 116
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 39.1 bits (87), Expect = 5e-04
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 60 NILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMITP--NGRFKTNTRLCLSI 233
+++ W + G K+ +EGG Y + FP E+P +PP P + + +CLSI
Sbjct: 37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 96
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 51 VPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSI 176
V N+ E++ GP ++PY GG + + P E+P+K PSI
Sbjct: 25 VNDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSI 66
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 45 EPVPSNILEWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMIT----PNGRFKTN 212
+P+ N+L H ++ P++ Y+GG + +I +P PP + + PN + N
Sbjct: 47 DPIKLNVL--HLEIR-PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGN 103
Query: 213 TRLCLSITDFHP 248
L + D++P
Sbjct: 104 VCLNILRQDWNP 115
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 187 HRMAGSRQTHDCASVLQTFIRTLEPCLVYFYDPYRSVEFYVGEDSYI 327
HR + +T +LQ +T+ P FYD Y + +F +D YI
Sbjct: 550 HRESVRFETGVATFLLQEVKKTVLPLYQRFYDKYINSDFTKNKDKYI 596
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 54 PSNILEWHYVVKGPEKSPYEG--GYYHGKIIFPREFPFK 164
PSN L ++V P S +G Y HGK +FP + FK
Sbjct: 311 PSNFLSTYFV--SPLVSAIDGTVDYLHGKSLFPEKRNFK 347
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 69 EWHYVVKGPEKSPYEGGYYHGKIIFPREFPFKPPSIYMIT 188
+W+ + GP S +E Y KI +P PP + ++
Sbjct: 40 DWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVS 79
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 244 IRTLEPCLVYFYDPYRSVEFYVGEDS 321
++ L P L YFY Y+S+E ++ D+
Sbjct: 117 VKDLVPDLTYFYKQYKSIEPWLQNDN 142
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = +2
Query: 203 QDKHTIVPQYYRLSSGHWNPAWSISTILTGLLSFMLEKTPTLGSIETSEYQKRCLAAESL 382
QD H ++ + + L PA ++T + L S +L +TP + Y K CL+A+ L
Sbjct: 116 QDTHDLLERCHPLGWFETLPALCVATNVEELYSVVLIETP------LAPYFKDCLSADDL 169
Query: 383 EINIKNKMFCELFPEYVEE 439
+ + L+ Y+E+
Sbjct: 170 DEQHIEIIRNTLYKAYLED 188
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 153 FPFKPPSIYMITP-NGRFKTNTRLCLSITDFHPDTGTLLGLFLRS 284
FP + + + P N R T + +++ H TLLGLFL S
Sbjct: 272 FPVQGVAAESVIPLNDRALRKTAIAMNLVAHHCKDSTLLGLFLES 316
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 323 TLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYVEEIEQQLKQRQEAMLLNQD 490
T+ +E +KR L + LE+ + PE + + ++LK R+E+ + +D
Sbjct: 462 TIVDLENMYREKRNLVLDCLEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTED 517
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = +2
Query: 263 AWSISTILTGLLSFMLEKTPTLGSIETSEYQKR--CLAAESLEINIKNKMFCELFPEYVE 436
+W ++ +LSF K L + +EY K + +N++ + C + YV
Sbjct: 295 SWLFQDVVPPVLSFSTAKAGFLSILPIAEYTKTLDLIFHRGFTVNLRMRFQCSIM-RYVG 353
Query: 437 EIEQQLKQRQEAML--LNQDSGANEVPLSHSL 526
E + + Q ++L L D G N +S L
Sbjct: 354 EHSTHICEGQYSVLNELLIDRGPNPFMISLDL 385
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 212 HTIVPQYYRLSSGHWNPAWSI 274
+ +V QY+ L+ GH+N AWS+
Sbjct: 112 YNLVLQYH-LAKGHYNAAWSL 131
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/52 (19%), Positives = 28/52 (53%)
Frame = +2
Query: 323 TLGSIETSEYQKRCLAAESLEINIKNKMFCELFPEYVEEIEQQLKQRQEAML 478
++ S +E + +++ +N + F + F + EE+E+Q+++ E ++
Sbjct: 158 SINSASGTEIRTSLRSSKGKSVNYNEQEFYDDFEDEEEEVEEQVEEEYEPII 209
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 527 LDCGSEVLHLHHCLDSTTLPLVVVLIAV 444
L C S+ L + H D +T+P ++ IAV
Sbjct: 465 LVCSSQDLMMEHSNDFSTMPTMIASIAV 492
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 435 STYSGN-NSQNILFFMFISRDSAAKHRFWYSEVS 337
++ +GN N+Q ++ ++F +R + + +WY+E +
Sbjct: 506 ASMAGNANAQFLMGYLFDTRGNTEQATYWYNEAA 539
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 457 TTTRGNVVESRQWCK*STSEPQSSMNCILTNLFVLVAFVCLTYMVKHVL 603
TTT G V QW E + ++ T LF + +VC M +++
Sbjct: 333 TTTVGRVTLKDQWDDLFIDELKRALRACKTFLFYPIYWVCYGQMTNNLI 381
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 49 LCRPTYWNGITSLKGRRKVPTKGDIIMERLFSQGNFRSNH 168
LCR ++ + S K R +P + + R +S ++ S+H
Sbjct: 127 LCRFVFFPVLLSYKRREMLPPQPSVRRPRFYSSYSYPSSH 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,771
Number of Sequences: 5004
Number of extensions: 66256
Number of successful extensions: 232
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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