Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0277
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 131 KDYFPKGISVQTTFDLHDNTEWQVQDKHTIVPQ 229
           K  F  G+ +   FD +DN +  V   +  VPQ
Sbjct: 163 KSLFENGVEIGINFDKYDNIQVNVSGDN--VPQ 193


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/38 (18%), Positives = 16/38 (42%)
 Frame = +2

Query: 179 HDNTEWQVQDKHTIVPQYYRLSSGHWNPAWSISTILTG 292
           + N  W      + +   YR++   W+  W +   ++G
Sbjct: 108 YPNWSWAKNQNCSGITSVYRIAIDEWDRLWVLDNGISG 145


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 453 NCCSISSTYSGNNSQNILFF 394
           N C+ S+ Y  NN+   L++
Sbjct: 309 NSCNYSNNYYNNNNYKKLYY 328


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 422 PEYVEEIEQQLKQRQEAMLLNQDSGAN 502
           P+  ++ +QQ +Q+Q   + N D   N
Sbjct: 841 PQQQQQQQQQQQQQQRGPMTNDDFNPN 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,572
Number of Sequences: 438
Number of extensions: 4673
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)