Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0268
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    26   5.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   6.7  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   6.7  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   8.9  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   8.9  

>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 284 CWNGKIWKSSAVSNRDXHQPSXN 216
           CWNG+IW+   +++ D H+ + N
Sbjct: 78  CWNGEIWQ---INHSDHHKFTLN 97


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 147 YRIGDTYGLXKHTRXLLDPERAAIXRXL 230
           YR+ D   L +HT  LL    A++ R L
Sbjct: 599 YRLNDFKSLIQHTNNLLQSNNASLLRRL 626


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 93  PNPHYIPWGTRVIVPEYKY 149
           PN  + PWG ++++P+  Y
Sbjct: 694 PNIEFPPWGFKILIPKKYY 712


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 379 PSYPGIMGMLVNGDPPIYGK 320
           P   G+M   +NG PP+YG+
Sbjct: 675 PQMGGMMAYTMNGVPPMYGQ 694


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 401 RFQRFGESSKKLTNSALCDFSSNYRRRQST-EWAPVNWSNLI 523
           R   F E   + T +  CD+  ++    S   W+P+NW+ L+
Sbjct: 220 RVNGFVEIWNRKTKNNRCDYKFHHDGDISCMAWSPINWTLLV 261


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 461 KSRRELN**AFSTTRRNVETVRHMTRKPFVSWY 363
           + +R+ N  AF  T       R MTR P   WY
Sbjct: 366 REQRDANSHAFEQTANGKRQFRFMTRGPSDPWY 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,161
Number of Sequences: 5004
Number of extensions: 54085
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)