Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0268
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0556 - 4514686-4514868,4515168-4515290,4515381-4515617,451...    28   6.9  
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18...    28   6.9  
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249...    27   9.2  
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           27   9.2  
03_02_0098 + 5608787-5610812,5610956-5611053                           27   9.2  

>12_01_0556 -
           4514686-4514868,4515168-4515290,4515381-4515617,
           4515747-4516358
          Length = 384

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 351 SIPMIPGYEGFSGHV 395
           +IP IPG E FSGHV
Sbjct: 143 NIPSIPGLEDFSGHV 157


>02_01_0031 -
           187798-187887,187996-188179,188468-188640,188917-189399,
           189557-190213,190821-190837,191501-192041
          Length = 714

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 383 FGSCAVRFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAP 502
           F SC ++  +  ESS  LT    C + S Y R    E AP
Sbjct: 452 FTSCILKVYQNAESSGCLTEDLACQYVSLYLRLGGLEEAP 491


>10_08_0136 -
           15122420-15122469,15123845-15124334,15124822-15124935,
           15125022-15125303,15125422-15125591,15125670-15125757,
           15126128-15126173,15126254-15126336,15126595-15126694,
           15127002-15127081,15127200-15127283,15127373-15127531,
           15128617-15128772,15129634-15130197
          Length = 821

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -1

Query: 503 QEPTQCSAFFGNSTKSRRELN**AFSTTRRNVETVRHMTRKPFVSWYHGDACKRXSAHLR 324
           + PT   A  G  T  RR+     FS+ +  V+ ++     PF ++  G      S  L 
Sbjct: 614 KRPTAFGALLGKPTSGRRQNLFSGFSSGQNMVDKIKSSVALPFHNFCGGAKSPATSIPLE 673

Query: 323 KTVR 312
           ++VR
Sbjct: 674 ESVR 677


>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 496 GSCKLVKPDPPLSINPTEIYHKHVXYV 576
           G+   + P PP S+ PT ++H H  ++
Sbjct: 205 GAGGAISPPPPSSLIPTHLHHHHHPFI 231


>03_02_0098 + 5608787-5610812,5610956-5611053
          Length = 707

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 504 TGAHSVLCLLR*FDEKSQRAELVSFFDDSP 415
           +G H  LC ++  D + +RA L +FF + P
Sbjct: 44  SGCHCFLCAIKEPDARLRRASLAAFFRELP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,340
Number of Sequences: 37544
Number of extensions: 376879
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)