Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0268
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)             31   0.76 
SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               29   3.1  
SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_56174| Best HMM Match : FeoB_C (HMM E-Value=8.7)                    28   7.1  
SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 32/117 (27%), Positives = 50/117 (42%)
 Frame = +3

Query: 93  PNPHYIPWGTRVIVPEYKYRIGDTYGLXKHTRXLLDPERAAIXRXLVXIPIRNGG*LPDL 272
           P+P++IP G     P++KY+IG+T+G  + T  LL     A     V   I     +P  
Sbjct: 45  PDPYHIP-GYCGYCPQFKYQIGETFG--RTTSCLLTDNSVAYSGKPVLSDIEPQ--VPP- 98

Query: 273 TVPATRNEIDHRETHGFP*MGGSPFTSIPMIPGYEGFSGHVPYGFNVSASRRKSSLI 443
                R+ I +R       +G    T   M+PGY G+     + +  S +    S I
Sbjct: 99  KADTRRDTIKNRAIS----LGDQKLTD-QMVPGYTGYIPKAEHYYGNSYAETSRSAI 150


>SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -1

Query: 278 NGKIWKSSAVSNRDXHQPSXNCCTLGIEKXSCVFXEPIRIADPILVLGDNDPCTPGNIM 102
           NG +    + +  D    S  CC        C    P+++   + V+ +ND C+ G  M
Sbjct: 163 NGDVHHEESATTSDKSSESYECCF----PKGCTLKTPVKLRQAVRVICNNDACSYGCYM 217


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 293  RDRPS*NARFSVNGRIXVYKHPHDTRIRRVFGSCAVRFQRF 415
            +DR   + RF +N    ++K+P + + RR++ S  V+F++F
Sbjct: 1550 KDRARASLRFLINVFRLIHKNPKEDKFRRIYKS-RVKFKKF 1589


>SB_55835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 359 HDTRIRRVFGSCAVRFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNWSNLILHYP 535
           HD  I  +    A +F +    +KK T     D  +N  ++++   AP++ +  ++H P
Sbjct: 567 HDDDINGIRALYASKFMQVTVHTKKRTEPQESDQKNNNNKKKNNASAPISENRRVIHEP 625


>SB_56174| Best HMM Match : FeoB_C (HMM E-Value=8.7)
          Length = 136

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 285 TRNEIDHRETHGFP*MGGSPFTSIPMIPGYEGFSGHV 395
           +R   DHRE +G P     PF + P+      F  H+
Sbjct: 60  SRPSYDHREAYGNPVENRQPFLATPIFANLRSFPIHM 96


>SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 603 GHVTCVSWANIPDVLMVDLSGI 538
           GHV C    N PD+L V+L G+
Sbjct: 474 GHVLCSILLNSPDLLRVNLQGV 495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,810,916
Number of Sequences: 59808
Number of extensions: 428939
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)