Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0268
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49110.1 68418.m06079 expressed protein  ; expression support...    30   1.1  
At1g31000.1 68414.m03796 F-box family protein contains F-box dom...    28   4.4  
At5g35400.1 68418.m04207 tRNA pseudouridine synthase family prot...    28   5.8  
At1g71260.1 68414.m08224 expressed protein                             28   5.8  
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    28   5.8  
At5g23450.2 68418.m02752 diacylglycerol kinase family protein co...    27   7.7  
At5g23450.1 68418.m02751 diacylglycerol kinase family protein co...    27   7.7  
At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At1g17250.1 68414.m02101 leucine-rich repeat family protein cont...    27   7.7  

>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 401 RFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPV 505
           R ++FGESS  +  +AL    ++YR  +  +W PV
Sbjct: 318 RVRKFGESSLGMLRTALLTAYNDYRLSKDCKWLPV 352


>At1g31000.1 68414.m03796 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 363

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 516 FDQFTGAHSV-LCLLR*FDEKSQRAELVSFFDDSPKR*NRTAHDPKTLR 373
           +  FTG   +  CL+R FD ++++ +LVS  ++S  +  R  H P  ++
Sbjct: 198 YGAFTGGDMLEWCLMR-FDVRTEKLDLVSRLNESSIQCYRPGHSPSLIK 245


>At5g35400.1 68418.m04207 tRNA pseudouridine synthase family protein
           weak similarity to  SP|P07649 tRNA pseudouridine
           synthase A (EC 4.2.1.70) (Uracil hydrolyase)
           {Escherichia coli}; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 420

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 392 MTRKPFVSWYHGDACKRXSAHLRKTVRF 309
           M  + +V ++H DAC +   + R+T RF
Sbjct: 1   MASRVYVHYHHADACSKARWNARETFRF 28


>At1g71260.1 68414.m08224 expressed protein
          Length = 238

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 127 SLSPSTSIGSAIRMGSXNTQDXFSIPSVQQFXXG 228
           +LSP T +GS I MGS ++ + F  PS++    G
Sbjct: 114 ALSP-TEVGSLISMGSKDSSEFFHDPSMKSSNAG 146


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
            pentatricopeptide (PPR) repeat-containing protein
            contains Pfam profiles:  PF00271 helicase conserved
            C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH
            box helicase
          Length = 1145

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 399  YGFNVSASRRKSSLIQLSATFRRITEEGRA 488
            Y   +S   RK SL +    FR++TEEG A
Sbjct: 1047 YNIMISELCRKDSLSKADILFRKMTEEGHA 1076


>At5g23450.2 68418.m02752 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 763

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 536 MDNGGSGLTNLQE-PTQCSAFFGNSTKSRRE 447
           MD G  GLT++Q+ PT+CS  +GN+    RE
Sbjct: 556 MDKGWMGLTSVQDPPTRCS--WGNTGGQDRE 584


>At5g23450.1 68418.m02751 diacylglycerol kinase family protein
           contains INTERPRO domain, IPR001206, DAG-kinase
           catalytic domain
          Length = 763

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 536 MDNGGSGLTNLQE-PTQCSAFFGNSTKSRRE 447
           MD G  GLT++Q+ PT+CS  +GN+    RE
Sbjct: 556 MDKGWMGLTSVQDPPTRCS--WGNTGGQDRE 584


>At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger)
           family protein (ATL4) contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 334

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 541 DLWIMEDQV*PIYRSPLSALPSSVIR 464
           D+W++ +Q  P+ RSPL A  S +++
Sbjct: 146 DIWLVSNQTCPLCRSPLFASESDLMK 171


>At1g17250.1 68414.m02101 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 756

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 205 SGSRRXLVCXSSPYVSPIRYLYSGTMTRVPQGI 107
           +GS    +C SSP +S + + Y+     +PQG+
Sbjct: 215 TGSIPSFMCKSSPQLSKLDFSYNDFTGNIPQGL 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,396
Number of Sequences: 28952
Number of extensions: 297386
Number of successful extensions: 663
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)