Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0267
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 147 1e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 83 4e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 82 7e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 57 2e-09
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 1.2
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 27 2.1
SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces pom... 26 3.6
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 4.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 147 bits (356), Expect = 1e-36
Identities = 83/199 (41%), Positives = 105/199 (52%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALXVPELXLQM 181
+G+TT RFPG+LN+DLRKLAVNMVPFPRLHF+ GFAPL + G+ ++A+ VPEL QM
Sbjct: 234 AGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQM 293
Query: 182 FXAKNMMVACDPRHGRYLTVATIFRGECL*KKLTSNWRIFRTKTARILSSGYPITARLPC 361
F A NMMVA DPRHGRYLTVA +FRG+ K++ R +TK + P
Sbjct: 294 FDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAV 353
Query: 362 VTYLRGVLKWLRPSLVTRRPYRPYSRGCLSSSWLCLGGKPSCTGTLXXXXXXXXXXXQSS 541
+ LK + + R K S
Sbjct: 354 CSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAES 413
Query: 542 NMNXLISEYQQYQDATADD 598
NMN L+SEYQQYQ+A D+
Sbjct: 414 NMNDLVSEYQQYQEAGIDE 432
Score = 136 bits (328), Expect = 3e-33
Identities = 59/95 (62%), Positives = 76/95 (80%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLKMASTFIGNTTAIQTI 432
+G++SMKEVDEQ+ ++Q KNS YFVEWIP+N AVC +PP+ LKM++TFIGN+T+IQ I
Sbjct: 318 RGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEI 377
Query: 433 FKRVSEQFVAMFRRKAFLHWYTGXGRMKWSSRXAE 537
F+R+ +QF AMFRRKAFLHWYTG G + AE
Sbjct: 378 FRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAE 412
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 82.6 bits (195), Expect = 4e-17
Identities = 37/89 (41%), Positives = 51/89 (57%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALXVPELXLQM 181
S IT LRF G LN DL + N+VP+PR+HF +AP+ S + + V E+ Q
Sbjct: 236 SSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQC 295
Query: 182 FXAKNMMVACDPRHGRYLTVATIFRGECL 268
F N MV CDPR GRY+ ++RG+ +
Sbjct: 296 FEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGLK--------MASTFIG 408
+G + ++V + I+ K + FV+W P KI +CD PP+ ++ A +
Sbjct: 320 RGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLS 379
Query: 409 NTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGXG 507
NTT+I + R+ +F M+ ++AF+HWY G G
Sbjct: 380 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 412
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.8 bits (193), Expect = 7e-17
Identities = 36/89 (40%), Positives = 51/89 (57%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRALXVPELXLQM 181
S IT LRF G LN DL + N+VP+PR+HF ++P+ S + + V E+ Q
Sbjct: 240 SSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQC 299
Query: 182 FXAKNMMVACDPRHGRYLTVATIFRGECL 268
F N MV CDPR GRY+ ++RG+ +
Sbjct: 300 FEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Score = 59.3 bits (137), Expect = 4e-10
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +1
Query: 253 QGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPPRGL--------KMASTFIG 408
+G + ++V + +I+++ + FV+W P KI +C PP+ + A +
Sbjct: 324 RGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLS 383
Query: 409 NTTAIQTIFKRVSEQFVAMFRRKAFLHWYTGXG 507
NTT+I + R+ +F M+ ++AF+HWY G G
Sbjct: 384 NTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEG 416
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 56.8 bits (131), Expect = 2e-09
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +2
Query: 2 SGITTCLRFPGQLNADLRKLAVNMVPFPRLHFYTPGFAPLTSRGAQQYRAL---XVPELX 172
S TT LR+PG +N DL + +++P PR HF + P T++ ++ +A+ V ++
Sbjct: 237 SASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVM 296
Query: 173 LQMFXAKNMMVACDP-RHGRYLTVATIFRGE 262
++ KN MV+ +P + ++++ I +GE
Sbjct: 297 RRLLLPKNQMVSVNPSKKSCFISILDIIQGE 327
Score = 45.6 bits (103), Expect = 6e-06
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 244 DDIQGRMSMKEVDEQLANIQNKNSTYFVEWIPNNCKIAVCDIPP---RGLKMASTFIGNT 414
D IQG +V + L I+ + F+ W P + ++A+ P +++ + N
Sbjct: 322 DIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANH 381
Query: 415 TAIQTIFKRVSEQFVAMFRRKAFLHWY 495
T+I ++FKR +Q+ + +R AFL Y
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQY 408
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 296 FASCSSTSFIDIRP*ISSQRSNTSRVEDHTRPSCFWRRTFAASARVXL 153
F+ C T I P + N + + D ++ FW++ F ASA V L
Sbjct: 25 FSKCHRTVTTKILPIVEKYAKNCNTIWDSSK---FWKQFFEASANVSL 69
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 290 WRIFRTKTARILSSGYPITARLPCVTYLRGVLKWLRPSL--VTRRPYRPYSRGCLSSSWL 463
+R+ K+ ++++ GYP R+P V L+ +L+ + V PY S S +W+
Sbjct: 208 FRLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWI 267
>SPCC576.02 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 239 VATIFRGECL*KKLTSNWRIFRTKTARILSSG 334
+ + +R ECL +L ++ + RT+ A I S+G
Sbjct: 117 LTSTYRSECLLYELLDSFGVSRTRVAAIASTG 148
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 217 STREVFDRCDDIQGRMSMKEVDEQLANIQNK 309
STR DR D G S++E+D+Q +N+
Sbjct: 277 STRYHQDRPDKRHGTYSLEEIDKQRKEFENR 307
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 423 YGRRVTNEGRSHFKTPRRYVTHGN 352
+ RR NE R++ +PR + THGN
Sbjct: 254 FRRREDNE-RNNSNSPRNFSTHGN 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,972
Number of Sequences: 5004
Number of extensions: 48105
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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