Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0265
         (338 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   4.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    20   8.0  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    20   8.0  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 184 LYFMKYMSLDNLNIVEVFQLNLKKLWKKCYIYSNKYCKKLNF*YIRI 324
           L+F+ Y+SL    ++        K  +K  + +NKYC  +   Y+ +
Sbjct: 290 LFFIVYVSL----LLGPHPTYFGKTGRKTVLKTNKYCNFIILFYLSV 332


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 307 NSIFYNIYWSKYNIFSTTFLGLAGIPRRYSD 215
           N I YNI  SK+        G+  + +R  D
Sbjct: 349 NPILYNIISSKFRSGFFKLCGMKIVKKRRKD 379


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 18  SSLYECSAGGKF 53
           SSLY C AG +F
Sbjct: 241 SSLYTCIAGYEF 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,727
Number of Sequences: 336
Number of extensions: 1029
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)