Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0265
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 36 0.002
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 29 0.26
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 25 3.2
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 3.2
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 7.3
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 24 7.3
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 24 7.3
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 23 9.6
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 23 9.6
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 23 9.6
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ... 23 9.6
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 35.5 bits (78), Expect = 0.002
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -3
Query: 336 GLSXNSYILKIQFFTIFIGVNITFFPQLF 250
GL N + IQF+ +FIGVNI F PQ F
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVFGPQHF 436
Score = 29.1 bits (62), Expect = 0.19
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 253 FLGLAGIPRRYSDYPD 206
FLGL G+PRR DYP+
Sbjct: 436 FLGLNGMPRRIPDYPE 451
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 28.7 bits (61), Expect = 0.26
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 337 RPFXKFLYTKNSIFYNIYWSKYNIFSTTFLGL 242
RPF KFL K IF + YW + + T +LGL
Sbjct: 202 RPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 190 FMKYMSLDNLNIVEVFQLNLKKLWKKCYIYSNKYC 294
+++ + +N + EVFQL + KK + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 238 QLNLKKLWKKCYIYSNKYCK 297
Q K WKKC +YCK
Sbjct: 54 QTGFSKYWKKCTYGIREYCK 73
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 23.8 bits (49), Expect = 7.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 106 QRINLFSLNLPSSIE*YQNLPPAEHSYNELPI 11
Q+IN+ LN+ +S L E SYN L I
Sbjct: 102 QKINVLQLNINASDNSLAYLSKPEESYNFLTI 133
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 163 YMNLMKKLYFMKYMSLDNLNIVEVFQLNLKKLWKK 267
Y +++ KL+F+KY+ LN+ +V L++ W +
Sbjct: 33 YKSVLSKLFFIKYLM---LNLTKV---GLRRFWSQ 61
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 160 KYMNLMKKLYFMKYMSLDNLNIVEVFQLNLKKLWKKCYIYSNKYCKKL 303
KY +L+ K+ ++ + N I + LN+ ++WKK + + + KKL
Sbjct: 323 KYPDLICKI--IERTNATNEQIEGLMGLNVLRVWKKTELVALQLSKKL 368
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 97 NLFSLNLPSSIE*YQNLPPAEHSYNELPILRN 2
+L LNL S ++ +++LP SY +LR+
Sbjct: 186 DLEDLNLQSIVQTFEDLPEGIQSYAFFQLLRS 217
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 310 KNSIFYNIYWSKYNIFSTTFLGLAG 236
K +FY IYW Y + + AG
Sbjct: 361 KTFLFYPIYWVCYGQMTNNLISQAG 385
>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 103
Score = 23.4 bits (48), Expect = 9.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 325 KFLYTKNSIFYNIYWSKY 272
K L N++ N+YW+KY
Sbjct: 47 KQLNALNNLLDNVYWNKY 64
>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 425
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 82 NLPSSIE*YQNLPPAEHSYNELPILRN 2
+LPS+ YQNLP + LP + N
Sbjct: 228 SLPSTPSSYQNLPSQSLTGESLPTVSN 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,275
Number of Sequences: 5004
Number of extensions: 17690
Number of successful extensions: 46
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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