Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0263
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 32 0.29
10_08_0520 - 18495118-18498237 29 2.0
01_01_1127 + 8930593-8932681,8932812-8933401 29 2.0
09_04_0500 - 18120287-18122233 29 2.7
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 4.7
06_01_0326 + 2372176-2373057,2373146-2373610 28 4.7
05_06_0224 + 26546066-26546830 28 4.7
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 28 4.7
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 27 6.2
07_01_0361 - 2655442-2655706,2656339-2656466,2658428-2658438,265... 27 6.2
08_02_1080 - 24197514-24199415 27 8.2
02_05_1245 + 35223504-35224778 27 8.2
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -3
Query: 404 IRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERR 294
++T T + +S RPR D+E ++ L PYSSE++R
Sbjct: 442 MQTITDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 322 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 423
RAR+ L A G + +W A+V R LGNV +
Sbjct: 751 RARILLSKARERGGTERVWMKSAIVERELGNVDE 784
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 322 RARVELRSASWHRGLQELWRLFAVVVRMLGNVGD 423
RAR+ L A G + +W A+V R LGNV +
Sbjct: 656 RARILLSKARERGGTERVWMKSAIVERELGNVDE 689
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 277 AVSVPERRSSDEYGRRARVELRSASWHR 360
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 246 WVWRLTDHLTTASNGSDSSSRGT 178
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -2
Query: 369 LKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHRILIWVWRLTDHLTTASNGSDSS 190
+ +VPR G + +RG S G+G SV +++ IW+ DH+ + SN SD
Sbjct: 221 IHNSVPRSGGLIRDSMHHFGIRGESDGDGISVMGSSN---IWI----DHV-SMSNCSDGL 272
Query: 189 SRGTEYSTTXRTARRAYSK 133
T+ ST + ++K
Sbjct: 273 IDITDGSTAITISNSHFTK 291
>05_06_0224 + 26546066-26546830
Length = 254
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 295 RRSSDEYGRRARVELRSASWHRGLQELWRLFAVVVRMLGNVGDWPL 432
RR D YG + + + H G+++ + A++ R LG W +
Sbjct: 23 RRVVDMYGHHVGFKAKVVALHGGIRQARAVHAILSRQLGGEKKWEI 68
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 260 WAFEVTL--SPFPSDAPLTSMDV-ERALSFAPRRGTAVFKSSGGCSLSW 397
+ FE TL PF + + DV +A+ A A F S GGC++SW
Sbjct: 54 FTFEFTLHTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSW 102
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 450 TASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGN 286
TA N +++ Q+P H E ELL T VP L T++ VRG+ GN
Sbjct: 105 TAGVNTAFYLSNTEQYPGHHDEIDMELLGT-VPGEPYTL---QTNVYVRGSGDGN 155
>07_01_0361 -
2655442-2655706,2656339-2656466,2658428-2658438,
2659586-2659704,2659746-2659906,2660115-2660132
Length = 233
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 337 LRSASWHRGLQELWRLFAV-VVRMLGNVGDWPLNIVTR 447
LRS W + + LW F+V +V L +V W L + +R
Sbjct: 58 LRSFEWLKQIVALWSQFSVNLVITLEDVAPWLLTVASR 95
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 277 AVSVPERRSSDEYGRRARVELRSASWHR 360
AV+VP+ ++ Y + ++E RS SW R
Sbjct: 2 AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29
>02_05_1245 + 35223504-35224778
Length = 424
Score = 27.1 bits (57), Expect = 8.2
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = -2
Query: 471 KTKNTVRTASYNIKRPVADISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASL 292
KTK++V TAS A + H ++ P T + +A ST+ ++
Sbjct: 30 KTKSSVATASMAASASTATTPRKHQHQHQRSPRATATQYSTTSSS-SAPSTATATSSSTA 88
Query: 291 GNGDSVTSNAHRILIWVWRLTDH-LTTASNGSDSSSRGTEYSTTXRTARRAYSKA 130
+ ++ + + + LT H L A+ SS R ST+ R + R +S A
Sbjct: 89 ASLQALRDSLPDLPL---LLTFHELAAATANFSSSHRLAPNSTSFRCSLRGHSAA 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,043
Number of Sequences: 37544
Number of extensions: 226705
Number of successful extensions: 719
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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