Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0261
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)               52   5e-07
SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)               34   0.087
SB_681| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)              28   7.5  
SB_36804| Best HMM Match : tRNA_int_endo (HMM E-Value=3.9)             28   7.5  
SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   9.9  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +2

Query: 497 TGAGNPAKSXKARGSNLRVHFKNTYETAMAIR 592
           T   NP KS KARGSNLRVH+KNT+E AMAI+
Sbjct: 6   TDPENPTKSCKARGSNLRVHYKNTHEAAMAIK 37


>SB_36598| Best HMM Match : E-MAP-115 (HMM E-Value=0.092)
          Length = 783

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 470 ENEKHRSNSELQY*AASRRHFPTSEPRQRTASRALEDRGATTRSEAQRAL 321
           E EK+  + EL+    S  HF   E ++R   RA+ED+    +SE ++ L
Sbjct: 332 EEEKYGKDGELRMLKESLAHFQAEEAKKREQIRAMEDQRKQEQSEKEKEL 381


>SB_681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 415 RRLAA*YCNSLFERCFSFSVLNIR*LKNGSRKPCEIXQSAWFKPP 549
           RRL+  +C     R F+ +VL ++  +N  +KP E  Q   F+PP
Sbjct: 20  RRLSDNWCRCPKARSFNSAVLRLKITRNNIKKPTEEQQ---FRPP 61


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
 Frame = -3

Query: 451 RTASYNIKRPVAD-ISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDS 275
           ++ S ++ + V+  +SQ  +    QP +  +    RRG     R   +++  A L     
Sbjct: 382 QSVSQSVSQSVSQSVSQSVSQSVSQPGQNARDYWIRRGLSYLERYFFLILFNAYLHEQTF 441

Query: 274 VTSNAHRVLIWVWRLTDHLTTASNGSDSSSRGTEYSTTCRTARR 143
                HR   W++R+  H+     G+ S      +  TC  + R
Sbjct: 442 CRWMRHRP--WIYRMLSHIDIKEKGATSEFMMRTHQPTCLVSGR 483


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 429 SGQSPTFPNIRTTTANSLQSS*RPRCHDAERSSTRALRPYSSEERRS 289
           S +SP+ P  RTT   S ++S       + R++ R    +SS +RR+
Sbjct: 155 SSKSPSPPTNRTTQGESPKTSSSGHGQHSSRTAVRRSASFSSSQRRT 201


>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
          Length = 207

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 364 KTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAHR 254
           KTAVPRRG K      S++ R   + + + +TS  HR
Sbjct: 112 KTAVPRRGVK-GLPLNSVIRRLVDVHSSEGMTSARHR 147


>SB_36804| Best HMM Match : tRNA_int_endo (HMM E-Value=3.9)
          Length = 229

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 516 RNHXKRVVQTSVFTLRTHMRPQWQSEKMPLRRAVRYLQNVI 638
           R H K++ Q    +LR  MR +WQ     L+   R  + VI
Sbjct: 146 RRHIKKLGQFHTRSLRAIMRIRWQDHLRRLKAVTRVKETVI 186


>SB_55129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 344 ASWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 457
           A+W  G  E WRL  +     G++  W L ++   S G
Sbjct: 62  ATWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 99



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 344 ASWHRGLQELWRLFAVVVRMLGNVGDWPLNIVTRCSNG 457
           A+W  G  E WRL  +     G++  W L ++   S G
Sbjct: 78  ATWSTGDLEYWRLGVLATWSTGDLEYWRLGVLATWSTG 115


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 235 RLTDHLTTASNGSDSSSRGTEYST 164
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,341
Number of Sequences: 59808
Number of extensions: 379415
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)