Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0261
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 316 SILVRGASLGNGDSVTSNAHRVLIWVWR 233
           SI  R +++ +GD +T N   + + VWR
Sbjct: 169 SIEARDSAIFDGDFITENNLPLGLEVWR 196


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 540 QTSVFTLRTHMRPQWQSE 593
           QT VF L TH    W S+
Sbjct: 171 QTIVFHLETHPNVTWYSQ 188


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 527 KARGSNLRVHFKNTYETAMAIRKDA 601
           KARG +L V  +  + T +A+ +DA
Sbjct: 641 KARGHSLLVADRPNFVTILALVRDA 665


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,135
Number of Sequences: 438
Number of extensions: 3558
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)