Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0260
(299 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 54 6e-07
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 52 3e-06
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 43 0.002
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 38 0.044
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 37 0.077
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 37 0.077
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 35 0.41
UniRef50_A5EB67 Cluster: Non-hemolytic phospholipase C; n=3; Pro... 34 0.54
UniRef50_A7PX82 Cluster: Chromosome chr12 scaffold_36, whole gen... 33 0.95
UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1, pu... 33 1.3
UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brug... 33 1.3
UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA... 32 2.2
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 32 2.2
UniRef50_UPI0000EB2BCD Cluster: UPI0000EB2BCD related cluster; n... 32 2.9
UniRef50_Q603D9 Cluster: Putative uncharacterized protein; n=1; ... 30 8.9
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 54.0 bits (124), Expect = 6e-07
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVN 41
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 51.6 bits (118), Expect = 3e-06
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
++ ARPL+SVYSEK E+ G LP VFKAPIRPD+VN
Sbjct: 1 MACARPLISVYSEKGES-SGKNVTLPAVFKAPIRPDIVN 38
Score = 33.9 bits (74), Expect = 0.72
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRLVTK-PXRIMGYGRAVARIPR 299
VH ++ KN+ QPY V+ + G GRAVARIPR
Sbjct: 40 VHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPR 78
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 42.7 bits (96), Expect = 0.002
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLV 178
ARP VSVYS S++V G PLP VF APIR D+V
Sbjct: 3 ARPSVSVYSASSDSVVGTC-PLPAVFTAPIRSDIV 36
Score = 36.7 bits (81), Expect = 0.10
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRL-VTKPXRIMGYGRAVARIPR 299
VH +M+KNS Q Y V R + G GRAVARIPR
Sbjct: 39 VHTNMAKNSRQAYAVNRLSGMNHSAHSWGTGRAVARIPR 77
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 37.9 bits (84), Expect = 0.044
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLV 178
++ ARP+VSV+ T ++ PLP VF +P+R DLV
Sbjct: 1 MTFARPIVSVFPSNDSTKATSSIPLPTVFVSPLRHDLV 38
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 37.1 bits (82), Expect = 0.077
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 80 PLVSVYSEKSET-VQGAAKPLPFVFKAPIRPDLVN 181
PLVSV+S T V PLP VF+ PIRPD+V+
Sbjct: 5 PLVSVFSADDSTKVTAKHIPLPAVFQTPIRPDIVS 39
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 37.1 bits (82), Expect = 0.077
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +2
Query: 74 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNGCPRFYVQEXXXXXXRDXEAGXQT 253
+RP VSV S T G PLP VF +PIRPD+V + +AG QT
Sbjct: 3 SRPTVSVLSADG-TATGTTIPLPKVFTSPIRPDIVQTVHTGMAKNKRQPYAVSEKAGHQT 61
Score = 36.7 bits (81), Expect = 0.10
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
VH M+KN QPY V+ + + G GRAVARIPR
Sbjct: 39 VHTGMAKNKRQPYAVSEKAGHQTSAESWGTGRAVARIPR 77
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 34.7 bits (76), Expect = 0.41
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRL-VTKPXRIMGYGRAVARIPR 299
VH +MSKN Q Y V++ R G GRA+AR+PR
Sbjct: 39 VHTNMSKNRRQAYAVSKMSGYQTSARSWGTGRAMARVPR 77
>UniRef50_A5EB67 Cluster: Non-hemolytic phospholipase C; n=3;
Proteobacteria|Rep: Non-hemolytic phospholipase C -
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
Length = 782
Score = 34.3 bits (75), Expect = 0.54
Identities = 25/62 (40%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = -1
Query: 251 FGXQPPXHAVGLXRVLGHRNVDIH*PGPDVWAP*IRTGGAWLHPAPSHSSLNTP-TLKVG 75
FG QP H VG V G R P PD AP G P PSH T LKV
Sbjct: 672 FGPQPGFHPVGFGAVPGFR------PAPDFDAPGFGFGAPSFFPGPSHGGAATEWELKVS 725
Query: 74 LP 69
P
Sbjct: 726 GP 727
>UniRef50_A7PX82 Cluster: Chromosome chr12 scaffold_36, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr12 scaffold_36, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 679
Score = 33.5 bits (73), Expect = 0.95
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = -3
Query: 192 RGHPLTRSGRMGALNTNGRGLAAPCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNS 13
RG PLT R+ L R L P SL +EY + K T R L + + Y+ S
Sbjct: 337 RGSPLTVIWRVIFLAWRKRNLPYPSHPSLLNEYHNAKVSHTQRFRCLDKAAILEDYYSAS 396
Query: 12 GDKD 1
G+KD
Sbjct: 397 GNKD 400
>UniRef50_Q4UES5 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=2; Theileria|Rep: 60S ribosomal subunit
protein L4/L1, putative - Theileria annulata
Length = 426
Score = 33.1 bits (72), Expect = 1.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRL-VTKPXRIMGYGRAVARIPR 299
VH +MSKN Q Y ++R R G GRA++R PR
Sbjct: 39 VHTNMSKNKRQAYAISRMSGYQTSARSWGTGRALSRTPR 77
Score = 32.7 bits (71), Expect = 1.7
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 71 VARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
V RP+VSV+S +E G+ +P VF P+R DLV+
Sbjct: 2 VHRPVVSVFSVSTEKRMGSTI-MPRVFSTPLRSDLVH 37
>UniRef50_Q4U6T4 Cluster: SL3; n=1; Brugia malayi|Rep: SL3 - Brugia
malayi (Filarial nematode worm)
Length = 306
Score = 33.1 bits (72), Expect = 1.3
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +2
Query: 92 VYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
VY++KSE + LP VF+AP+RPD+V+
Sbjct: 127 VYNDKSEPTDTQIR-LPGVFRAPLRPDIVS 155
Score = 31.1 bits (67), Expect = 5.1
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
VH + KN QPY V+ + G GRAVARIPR
Sbjct: 157 VHDQIRKNKRQPYAVSVEAGHQTSAESWGTGRAVARIPR 195
>UniRef50_A5UPY3 Cluster: HAD-superfamily hydrolase, subfamily IA,
variant 1; n=2; Roseiflexus|Rep: HAD-superfamily
hydrolase, subfamily IA, variant 1 - Roseiflexus sp.
RS-1
Length = 223
Score = 32.3 bits (70), Expect = 2.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 146 RTGGA-WLHPAPSHSSLNTPTLKVGLPIDSFRYFSEAIPP 30
R GG WLH A SH P +++GLP+ E +PP
Sbjct: 163 RIGGLRWLHAAQSHFHDVVPAVQMGLPVAWINRKHEPLPP 202
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 32.3 bits (70), Expect = 2.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLV 178
++ RPL +VY + V G + +P VF+ PIR DL+
Sbjct: 1 MATIRPLANVYGINGKKVVGEVE-IPVVFQTPIRHDLI 37
>UniRef50_UPI0000EB2BCD Cluster: UPI0000EB2BCD related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB2BCD UniRef100
entry - Canis familiaris
Length = 321
Score = 31.9 bits (69), Expect = 2.9
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 55 RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQ-GAHTSGP---GQWMSTFLCPRTRXSP 222
R+ S G P G F+E G S A P R+Q G SGP G+ +T PR R P
Sbjct: 240 RSTSRGPPRTHPGDFQEHIPGVPVSTASPPRVQPGPPRSGPHLHGRVPTTTPAPRGRKRP 299
Query: 223 TA 228
A
Sbjct: 300 AA 301
>UniRef50_Q603D9 Cluster: Putative uncharacterized protein; n=1;
Methylococcus capsulatus|Rep: Putative uncharacterized
protein - Methylococcus capsulatus
Length = 330
Score = 30.3 bits (65), Expect = 8.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 112 DGAGCSQAPPVRIQGAHTSGPGQWM 186
DGAGC A VR T GPG W+
Sbjct: 164 DGAGCEGARLVRAGREFTPGPGHWV 188
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,067,865
Number of Sequences: 1657284
Number of extensions: 5271202
Number of successful extensions: 11986
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11978
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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