Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0260
         (299 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   2.2  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    21   3.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   6.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    19   8.7  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 125 HPAPSHSSLNTPTL 84
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 112 DGAGCSQAPPVRIQGAHTSGP 174
           + +  S  PP+ I GA  +GP
Sbjct: 300 EDSSISGVPPLSIDGALEAGP 320


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +1

Query: 241  WXPNHXESWGTDVL 282
            W P   E W  D+L
Sbjct: 1016 WKPPAREEWNGDIL 1029


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 139 PVRIQGAHTSG 171
           PVRI G H  G
Sbjct: 196 PVRIMGVHRPG 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,118
Number of Sequences: 336
Number of extensions: 1194
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)