Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0260
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 48 3e-07
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 47 5e-07
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 1.0
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 1.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 3.1
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 5.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 24 5.5
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 23 9.6
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 23 9.6
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 48.0 bits (109), Expect = 3e-07
Identities = 27/63 (42%), Positives = 33/63 (52%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNGCPRFYVQEXXXXXXRDXEAG 244
++ ARP VS+YS K +V LPFVFKAPIRPDLV + +AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 245 XQT 253
QT
Sbjct: 60 HQT 62
Score = 34.3 bits (75), Expect = 0.004
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
VH +++KN QPY V+ + + G GRA+ARIPR
Sbjct: 40 VHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPR 78
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 47.2 bits (107), Expect = 5e-07
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = +2
Query: 65 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNGCPRFYVQEXXXXXXRDXEAG 244
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV + +AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 245 XQT 253
QT
Sbjct: 60 HQT 62
Score = 34.3 bits (75), Expect = 0.004
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
VH +++KN QPY V+ + + G GRA+ARIPR
Sbjct: 40 VHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPR 78
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 1.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 126 APCTVSLFSEYTDTKGRATDRLISLL 49
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 64 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 174
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 24.6 bits (51), Expect = 3.1
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -2
Query: 211 EFLDIETWTSIDQVRTYGRLEYEREGLG 128
++ DI++WT I+++++ G L +G
Sbjct: 650 DYDDIQSWTIIEEIQSLGVLHLSSPSVG 677
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 53 SEMSLSVARPLVSVYSE 103
SEMSL++A P+ + Y+E
Sbjct: 96 SEMSLTIALPISAAYTE 112
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -1
Query: 101 LNTPTLKVGLPIDSFRYFSEAIPPKYTL 18
+N PT+ G P S +IPP + +
Sbjct: 235 MNNPTIPKGTPSTSIEGAKTSIPPSHAM 262
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 23.0 bits (47), Expect = 9.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 119 APSHSSLNTPTLK-VGLPIDSFRYFSEAIPPK 27
+PS PT V P+ + +Y SEA PPK
Sbjct: 422 SPSSIPSGLPTYAHVNSPLGTEQYPSEAYPPK 453
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Frame = +1
Query: 154 GAHTSGPGQWMSTF-LCP 204
GAH S +W ST +CP
Sbjct: 877 GAHASHASEWFSTHTICP 894
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,607
Number of Sequences: 5004
Number of extensions: 19467
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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