Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0260
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 33 0.031
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 33 0.041
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.13
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 31 0.13
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 0.67
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 1.6
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 2.1
09_06_0153 - 21243108-21245660 27 2.7
03_06_0095 - 31612293-31612607,31612982-31613119,31613229-316133... 27 2.7
03_01_0147 - 1170481-1171260,1171332-1171511 27 2.7
12_02_0417 - 18896949-18897269,18897340-18897424,18899561-188996... 27 3.6
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987... 26 4.7
05_04_0220 - 19167485-19169290 26 6.3
12_02_0842 - 23588826-23589198,23589548-23590203 25 8.3
09_04_0541 + 18437075-18440062 25 8.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 33.5 bits (73), Expect = 0.031
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 186 VHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
VH +S N QPY V+RR + G GRAV+RIPR
Sbjct: 44 VHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPR 82
Score = 30.3 bits (65), Expect = 0.29
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNGCPRFYVQEXXXXXXRDXEAGXQ 250
RPLVSV + + + T ++ L VF+AP+RPD+V R AG Q
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 251 T 253
T
Sbjct: 66 T 66
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 33.1 bits (72), Expect = 0.041
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 68 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLV 178
+ ARPLVSV + E A +P V +APIRPD+V
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVV 40
Score = 31.9 bits (69), Expect = 0.095
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 189 HVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
H +S N QPY V+RR + G GRAV+RIPR
Sbjct: 44 HKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPR 81
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 171
ASL N I +PTF +G + G S + + GAHT G
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIG 169
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ 180
ASL N + P+F V G SQA V + GAHT G Q
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ 171
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.1 bits (62), Expect = 0.67
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 171
ASL N I +PT +G + G S + + GAHT G
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIG 169
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 40 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 171
ASL+ N ++ +PT V ++ G S V + GAHT G
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIG 240
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 57
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 126 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 4
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>03_06_0095 -
31612293-31612607,31612982-31613119,31613229-31613315,
31613410-31613469,31613563-31613662,31613757-31614163,
31614335-31614805,31614910-31615032,31615396-31615479,
31615609-31615678,31615767-31615846
Length = 644
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 148 IQGAHTSGPGQWMSTFLCPRTR 213
+ G +T PGQW+ T L PR +
Sbjct: 484 VLGCNTYCPGQWLRTLLHPRIK 505
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 34 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 171
G ASL+ ++I +PTF++ + G +Q V + GAHT G
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVG 185
>12_02_0417 -
18896949-18897269,18897340-18897424,18899561-18899656,
18900418-18900476,18901285-18901359
Length = 211
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +2
Query: 80 PLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNGCPRFYVQEXXXXXXRDXEAGXQTXP 259
PL ++ + Q A+ L F + +RP +VNG P+ E G + P
Sbjct: 131 PLTPQQMQEQQLQQQQAQLLSFGGQMVMRPGVVNGIPQLLQGEMHRGADHQNAGGATSEP 190
Query: 260 NHGVRT 277
+ R+
Sbjct: 191 SESHRS 196
>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
19799503-19799671,19799758-19799850
Length = 1330
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 171 TWSMDVHVSMSKNSXQPYCVTRRLVT 248
T +D H+ + +N + +C+TRRLV+
Sbjct: 1107 TLEIDDHLLLLQNPFRNFCLTRRLVS 1132
>05_04_0220 - 19167485-19169290
Length = 601
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 171 SGRMGALNTNGRGLAAPCTVSLFS 100
+G +GAL +NG +A C+ SLF+
Sbjct: 328 AGPLGALESNGWVYSAHCSFSLFT 351
>12_02_0842 - 23588826-23589198,23589548-23590203
Length = 342
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 118 AGCSQAPPVRIQGAHTSGPG 177
A C + PPV I G GPG
Sbjct: 320 AACRRWPPVEINGGGGGGPG 339
>09_04_0541 + 18437075-18440062
Length = 995
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 143 TGGAWLHPAPSHSS-LNTPTLKVGLPIDSFRYFSEAI 36
T G+WL PAP S+ L T K+ +S + + E++
Sbjct: 714 TAGSWLAPAPMSSTLLATMASKLPTKANSIQLWGESL 750
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,995,368
Number of Sequences: 37544
Number of extensions: 155964
Number of successful extensions: 387
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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