Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0260
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                42   7e-05
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)               25   8.6  
SB_23703| Best HMM Match : TTL (HMM E-Value=0)                         25   8.6  
SB_51790| Best HMM Match : TTL (HMM E-Value=0)                         25   8.6  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 20/36 (55%), Positives = 26/36 (72%)
 Frame = +2

Query: 74  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
           ARP+++V++E  E+       LP VFKAPIRPDLVN
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVN 35



 Score = 33.5 bits (73), Expect = 0.032
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 186 VHVSMSKNSXQPYCVTRRLVTK-PXRIMGYGRAVARIPR 299
           VH +++KN  QPY V +    +      G GRAVARIPR
Sbjct: 37  VHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPR 75


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 141  GRGLAAPCTVSLFSEYTDTKGRATDRLI 58
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_29074| Best HMM Match : Kazal_2 (HMM E-Value=3.3e-16)
          Length = 711

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 174 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTKG 79
           + G     +T+G  L +PC  SLF  + D  G
Sbjct: 437 QQGNSQVCSTDGVTLQSPCHASLFHRHVDYPG 468


>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
          Length = 657

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 50  SSEMSLSVARPLVSVYSEKSETVQGAAKPL 139
           SS +S S  RP   + S K+ +++ A KPL
Sbjct: 346 SSHLSKSNVRPKSQLLSSKNHSLRSALKPL 375


>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
          Length = 536

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 50  SSEMSLSVARPLVSVYSEKSETVQGAAKPL 139
           SS +S S  RP   + S K+ +++ A KPL
Sbjct: 346 SSHLSKSNVRPKSQLLSSKNHSLRSALKPL 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,804,093
Number of Sequences: 59808
Number of extensions: 156275
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)