Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0260
(299 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13382-1|CAA31759.1| 407|Drosophila melanogaster protein ( Dros... 54 3e-08
BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p pro... 54 3e-08
AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p pro... 54 3e-08
AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA... 54 3e-08
BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p pro... 30 0.62
AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-P... 30 0.62
BT025834-1|ABF85734.1| 503|Drosophila melanogaster IP09280p pro... 28 1.9
AE013599-2607|AAF57757.1| 260|Drosophila melanogaster CG14497-P... 28 1.9
>X13382-1|CAA31759.1| 407|Drosophila melanogaster protein (
Drosophila melanogastermRNA for put. ribosomal protein
L1. ).
Length = 407
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVN 41
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 183 DVHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
+VH + +N+ Q Y V+ + G GRAVARIPR
Sbjct: 42 EVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPR 81
>BT025959-1|ABG02203.1| 233|Drosophila melanogaster IP15855p
protein.
Length = 233
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVN 41
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 183 DVHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
+VH + +N+ Q Y V+ + G GRAVARIPR
Sbjct: 42 EVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPR 81
>AY069485-1|AAL39630.1| 401|Drosophila melanogaster LD21756p
protein.
Length = 401
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVN 41
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 183 DVHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
+VH + +N+ Q Y V+ + G GRAVARIPR
Sbjct: 42 EVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPR 81
>AE014297-4196|AAG22173.1| 401|Drosophila melanogaster CG5502-PA
protein.
Length = 401
Score = 54.0 bits (124), Expect = 3e-08
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +2
Query: 59 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
MSL ARPLVSVY+EK+E + LP VFKAPIRPD+VN
Sbjct: 1 MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVN 41
Score = 28.3 bits (60), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 183 DVHVSMSKNSXQPYCVTRRLVTKPX-RIMGYGRAVARIPR 299
+VH + +N+ Q Y V+ + G GRAVARIPR
Sbjct: 42 EVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPR 81
>BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p
protein.
Length = 1953
Score = 29.9 bits (64), Expect = 0.62
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 64 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQG--AHTSGPG 177
++GSP ++VG G G S APP + AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326
>AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-PC
protein.
Length = 2528
Score = 29.9 bits (64), Expect = 0.62
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 64 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQG--AHTSGPG 177
++GSP ++VG G G S APP + AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326
>BT025834-1|ABF85734.1| 503|Drosophila melanogaster IP09280p
protein.
Length = 503
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 127 SQAPPVRIQGAHTSGPGQWMSTFLCPRTRXSPTA*XGGWXPNH 255
S PPV G + S G LCP R + G + PNH
Sbjct: 307 SVMPPVPFLGPNPSSDGVVTYQSLCPTNRVTVKLESGDYRPNH 349
>AE013599-2607|AAF57757.1| 260|Drosophila melanogaster CG14497-PA
protein.
Length = 260
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 127 SQAPPVRIQGAHTSGPGQWMSTFLCPRTRXSPTA*XGGWXPNH 255
S PPV G + S G LCP R + G + PNH
Sbjct: 64 SVMPPVPFLGPNPSSDGVVTYQSLCPTNRVTVKLESGDYRPNH 106
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,930,163
Number of Sequences: 53049
Number of extensions: 248560
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 549010566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -