Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0260
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    45   9e-06
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   1.9  
Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical p...    27   3.3  
Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical p...    27   3.3  
AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical ...    27   3.3  
AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin monoox...    26   4.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +2

Query: 74  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVN 181
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVS 37


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 122 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 21
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>Z70718-11|CAA94680.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 165 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 52
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>Z68301-10|CAA92629.1|  590|Caenorhabditis elegans Hypothetical
           protein W01B6.9 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 165 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 52
           + G LN NGR   A      F++YT  T  R TD   SL
Sbjct: 7   KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45


>AF067624-4|AAM15592.1|  644|Caenorhabditis elegans Hypothetical
           protein M01B12.4b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 174 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 61
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607


>AF067624-2|AAC17562.3|  634|Caenorhabditis elegans Hypothetical
           protein M01B12.4a protein.
          Length = 634

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 174 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 61
           R  R+ A+    RG+A+P T +L     D K  GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597


>Z70286-4|CAA94291.2|  533|Caenorhabditis elegans Hypothetical
           protein K08C7.2 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 183 DVHVSMSKNSXQPYCVTRRLVTKPXRIMGYGRAV 284
           DV V +S+ + Q Y VTRR      RI  YG+ +
Sbjct: 200 DVAVELSRIAKQVYLVTRRGTWVFNRIYDYGQPI 233


>AJ582070-1|CAE46540.1|  533|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 183 DVHVSMSKNSXQPYCVTRRLVTKPXRIMGYGRAV 284
           DV V +S+ + Q Y VTRR      RI  YG+ +
Sbjct: 200 DVAVELSRIAKQVYLVTRRGTWVFNRIYDYGQPI 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,381,111
Number of Sequences: 27780
Number of extensions: 116789
Number of successful extensions: 249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)