Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0260
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    36   0.007
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    36   0.007
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    27   2.3  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    27   3.1  
At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate 1-p...    26   4.1  
At5g45090.1 68418.m05531 lectin-related low similarity to PP2 le...    25   7.1  
At5g41950.1 68418.m05108 expressed protein                             25   7.1  
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin...    25   7.1  
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac...    25   7.1  
At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative (CH...    25   7.1  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    25   7.1  
At5g47330.1 68418.m05834 palmitoyl protein thioesterase family p...    25   9.4  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    25   9.4  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    25   9.4  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 186 VHVSMSKNSXQPYCVTRRLVTK-PXRIMGYGRAVARIPR 299
           VH  +S NS QPY V+++   +      G GRAV+RIPR
Sbjct: 46  VHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPR 84



 Score = 33.5 bits (73), Expect = 0.027
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 68  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVN 181
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVN 44


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 59  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVN 181
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVN 43



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 186 VHVSMSKNSXQPYCVTRRLVTK-PXRIMGYGRAVARIPR 299
           VH  +S NS QPY V+++   +      G GRAV+RIPR
Sbjct: 45  VHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPR 83


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 122 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 24
           PAPS ++ N   +   +P+D F    E  PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 137 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 24
           G W+H   SH+  ++  L VG+ +      Y+S + P +Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


>At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase beta subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41141
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase,
           pyrophosphate-dependent) (Pyrophosphate-dependent
           6-phosphofructose-1-kinase) (PPI-PFK) {Ricinus communis}
          Length = 585

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 83  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNGCP 190
           + SVYSE   +      PLP VFK P +  +++G P
Sbjct: 26  VTSVYSEVQASRIDHTLPLPSVFKTPFK--IIDGPP 59


>At5g45090.1 68418.m05531 lectin-related low similarity to PP2
           lectin polypeptide [Cucurbita maxima] GI:410437;
           contains Pfam profile PF01582: TIR domain
          Length = 332

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 85  SVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQW 183
           SVGV+RE+   + C   P  ++Q +H+     W
Sbjct: 163 SVGVYREKEANSKCFMVPARKLQMSHSEKLINW 195


>At5g41950.1 68418.m05108 expressed protein
          Length = 565

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 99  EYTDTKGRATDRLISLL*RSYTSEIYTNSGDKD 1
           +  D +GR+  R+++   R Y S I  N  D D
Sbjct: 192 QVNDEEGRSRQRVLAFAARKYASAIERNPDDHD 224


>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
           phosphoesterase family protein contains Pfam profiles:
           PF00149 calcineurin-like phosphoesterase, PF01344 kelch
           motif
          Length = 881

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 131 WLHPAPSHSSLNT 93
           WLHPAP + +L T
Sbjct: 6   WLHPAPQYKTLET 18


>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
           acetohydroxy-acid synthase (ALS) nearly identical to
           SP|P17597 Acetolactate synthase, chloroplast precursor
           (EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
           synthase) (ALS) {Arabidopsis thaliana}
          Length = 670

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 62  SFRYFSEAIPPKYTL 18
           SF+ F EAIPP+Y +
Sbjct: 454 SFKTFGEAIPPQYAI 468


>At2g30240.1 68415.m03680 cation/hydrogen exchanger, putative
           (CHX13) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 831

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 129 AAPCTVSLFSEYTDTKGR 76
           AAPC+V++F +  +T+GR
Sbjct: 617 AAPCSVAIFIDRGETEGR 634


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 83  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLV 178
           LV +++  SE+++    PLPF  K+P +PD++
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVL 381


>At5g47330.1 68418.m05834 palmitoyl protein thioesterase family
           protein 
          Length = 314

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 287 GNSTSVPHDSXWFGXQP 237
           G+   VP DS WFG  P
Sbjct: 221 GDKVIVPKDSSWFGFYP 237


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 58  NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 171
           N +I +PT S+          G S    V + GAHT G
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIG 200


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 128  LHPAPSHSSLNTPTLKVGLPID 63
            LH  P H S  +P +  G P D
Sbjct: 1178 LHQRPGHQSAESPNMNRGYPYD 1199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,124,144
Number of Sequences: 28952
Number of extensions: 111797
Number of successful extensions: 308
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)