Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0259
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   4.0  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    27   4.0  
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389...    26   7.1  
12_02_0315 - 17417161-17417401,17419426-17419616                       26   9.3  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     26   9.3  

>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 148 GSRARFQLSGNSGRKHSRCCTS 213
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 279 GGYHGSSSHCDTMLP 235
           G +HG +SHC T+LP
Sbjct: 208 GFHHGGTSHCRTLLP 222


>04_03_0985 -
           21438036-21438116,21438373-21438495,21438903-21438995,
           21439176-21439388,21439589-21439687,21440248-21440317,
           21442549-21442619,21442817-21442954,21443034-21443132,
           21444061-21444144,21444268-21444324,21444594-21444683,
           21444886-21445026,21445778-21445882,21445962-21446114,
           21446215-21446316,21446404-21446562,21447039-21447222,
           21447336-21447418,21447523-21447588,21447736-21447793,
           21447903-21448003,21448269-21448355,21449063-21449185,
           21449285-21449364,21449857-21450066,21450159-21450270,
           21450709-21450927,21451356-21451726,21451866-21451965,
           21452544-21452752,21453232-21453337,21453435-21453767
          Length = 1439

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 127 GSVDSISGSRARFQLSGNSGRKHSRCCTSI-LRKFSG 234
           GS DS+ G + R   + N   K   C T I LRK SG
Sbjct: 668 GSKDSLVGYQVRLDSARNERTKLLFCTTGILLRKLSG 704


>12_02_0315 - 17417161-17417401,17419426-17419616
          Length = 143

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 109 CNIWHWGSVDSISGSRARFQLSGNSGRKHSRC 204
           C IW   ++ ++ G+++ F L+G       RC
Sbjct: 16  CGIWQKAAMVALQGNKSWFGLAGGGATVRLRC 47


>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 214 CLCSSGCASCRYS 176
           C C +GC  C+YS
Sbjct: 14  CQCGNGCGGCKYS 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,418,412
Number of Sequences: 37544
Number of extensions: 137749
Number of successful extensions: 253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)